ammonia-oxidizing enrichment culture (ID 420464) - BioProject

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Accession: PRJDB6348 ID: 420464

ammonia-oxidizing enrichment culture

Metagenomics of long-term continuous cultivation for thermophiles

We performed long-term continuous cultivation for thermophiles thriving in a geothermal groundwater stream of a Japanese gold mine. To obtain genome information of the cultivates, we conducted shotgun metagenomic sequencing.

Accession	PRJDB6348
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	ammonia-oxidizing enrichment culture[Taxonomy ID: 1566733] unclassified sequences; ammonia-oxidizing enrichment culture
Publications	Kato S et al., "Long-Term Cultivation and Metagenomics Reveal Ecophysiology of Previously Uncultivated Thermophiles Involved in Biogeochemical Nitrogen Cycle.", Microbes Environ, 2018 Mar 29;33(1):107-110
Submission	Registration date: 4-Dec-2017 Japan Agency for Marine-Earth Science and Technology
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6455
WGS master	41
SRA Experiments	7
Protein Sequences	78465
Publications
PubMed	1
PMC	1
Other datasets
BioSample	48
Assembly	41

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

41
41

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_002898395.1	BEHE00000000	SAMD00093752	HRbin02	Candidatus Calditenuaceae archaeon HR02
GCA_002898735.1	BEHY00000000	SAMD00093772	HRbin22	Candidatus Thermoflexus japonica
GCA_002898355.1	BEHD00000000	SAMD00093751	HRbin01	archaeon HR01
GCA_002898595.1	BEHF00000000	SAMD00093753	HRbin03	archaeon HR03
GCA_002898655.1	BEHG00000000	SAMD00093754	HRbin04	archaeon HR04
GCA_002898445.1	BEHH00000000	SAMD00093755	HRbin05	archaeon HR05
GCA_002898815.1	BEHI00000000	SAMD00093756	HRbin06	archaeon HR06
GCA_002898695.1	BEHJ00000000	SAMD00093757	HRbin07	bacterium HR07
GCA_002898775.1	BEHK00000000	SAMD00093758	HRbin08	bacterium HR08
GCA_002923295.1	BEHL00000000	SAMD00093759	HRbin09	bacterium HR09
GCA_002923315.1	BEHM00000000	SAMD00093760	HRbin10	bacterium HR10
GCA_002898535.1	BEHN00000000	SAMD00093761	HRbin11	bacterium HR11
GCA_002898915.1	BEHO00000000	SAMD00093762	HRbin12	bacterium HR12
GCA_002898755.1	BEHP00000000	SAMD00093763	HRbin13	bacterium HR13
GCA_002898835.1	BEHQ00000000	SAMD00093764	HRbin14	bacterium HR14
GCA_002898555.1	BEHR00000000	SAMD00093765	HRbin15	bacterium HR15
GCA_002898895.1	BEHS00000000	SAMD00093766	HRbin16	bacterium HR16
GCA_002898575.1	BEHT00000000	SAMD00093767	HRbin17	bacterium HR17
GCA_002898335.1	BEHU00000000	SAMD00093768	HRbin18	bacterium HR18
GCA_002898315.1	BEHV00000000	SAMD00093769	HRbin19	bacterium HR19
GCA_002898675.1	BEHW00000000	SAMD00093770	HRbin20	bacterium HR20
GCA_002898295.1	BEHX00000000	SAMD00093771	HRbin21	bacterium HR21
GCA_002923335.1	BEHZ00000000	SAMD00093773	HRbin23	bacterium HR23
GCA_002898715.1	BEIA00000000	SAMD00093774	HRbin24	bacterium HR24
GCA_002898615.1	BEIB00000000	SAMD00093775	HRbin25	bacterium HR25
GCA_002898875.1	BEIC00000000	SAMD00093776	HRbin26	bacterium HR26
GCA_002898975.1	BEID00000000	SAMD00093777	HRbin27	bacterium HR27
GCA_002898255.1	BEIE00000000	SAMD00093778	HRbin28	bacterium HR28
GCA_002898215.1	BEIF00000000	SAMD00093779	HRbin29	bacterium HR29
GCA_002898795.1	BEIG00000000	SAMD00093780	HRbin30	bacterium HR30
GCA_002923355.1	BEIH00000000	SAMD00093781	HRbin31	bacterium HR31
GCA_002898935.1	BEII00000000	SAMD00093782	HRbin32	bacterium HR32
GCA_002923375.1	BEIJ00000000	SAMD00093783	HRbin33	bacterium HR33
GCA_002923395.1	BEIK00000000	SAMD00093784	HRbin34	bacterium HR34
GCA_002898235.1	BEIL00000000	SAMD00093785	HRbin35	bacterium HR35
GCA_002898995.1	BEIM00000000	SAMD00093786	HRbin36	bacterium HR36
GCA_002898375.1	BEIN00000000	SAMD00093787	HRbin37	bacterium HR37
GCA_002898635.1	BEIO00000000	SAMD00093788	HRbin38	bacterium HR38
GCA_002898955.1	BEIP00000000	SAMD00093789	HRbin39	bacterium HR39
GCA_002898275.1	BEIQ00000000	SAMD00093790	HRbin40	bacterium HR40
GCA_002898855.1	BEIR00000000	SAMD00093791	HRbin41	bacterium HR41

SRA Data Details

Parameter	Value
Data volume, Gbases	10
Data volume, Mbytes	5422

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ammonia-oxidizing enrichment culture

Metagenomics of long-term continuous cultivation for thermophiles

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