bioreactor metagenome (ID 387015) - BioProject

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Accession: PRJNA387015 ID: 387015

bioreactor metagenome

Genome-resolved metagenomics of marine perchlorate-reducing communities

Metabolic interactions and genetic exchange are important features of microbial communities. More...

Accession	PRJNA387015
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	bioreactor metagenome[Taxonomy ID: 1076179] unclassified sequences; metagenomes; ecological metagenomes; bioreactor metagenome
Submission	Registration date: 8-Jan-2018 University of California, Berkeley
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	11132
WGS master	60
SRA Experiments	20
Protein Sequences	180340
Other datasets
BioSample	70
Assembly	60

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

40
20
60

Assembly	WGS	BioSample	Infraspecies Id	Taxonomy
GCA_002869105.1	PKTP00000000	SAMN07982674	BM001	Alphaproteobacteria bacterium
GCA_002869535.1	PKUK00000000	SAMN07982696	BM504	Arcobacter sp.
GCA_002869565.1	PKUJ00000000	SAMN07982695	BM102	Arcobacter sp.
GCA_002869045.1	PKTS00000000	SAMN07982677	BM101	Azoarcus sp.
GCA_007713545.1	VMRV00000000	SAMN11950943	PHD	Azoarcus sp. PHD
GCA_002869225.1	PKTG00000000	SAMN07982665	BM706	Candidatus Muiribacterium halophilum
GCA_002869205.1	PKTJ00000000	SAMN07982668	BM521	Candidatus Parcubacteria bacterium
GCA_002869265.1	PKTH00000000	SAMN07982666	BM507	Candidatus Parcubacteria bacterium
GCA_002869235.1	PKTI00000000	SAMN07982667	BM519	Candidatus Parcubacteria bacterium
GCA_002869165.1	PKTK00000000	SAMN07982669	BM705	Candidatus Parcubacteria bacterium
GCA_002867475.1	PKTL00000000	SAMN07982670	BM511	Candidatus Woesearchaeota archaeon
GCA_002868855.1	PKUM00000000	SAMN07982699	BM003	Chromatiales bacterium
GCA_002869095.1	PKTO00000000	SAMN07982673	BM714	Clostridiales bacterium
GCA_002869005.1	PKTU00000000	SAMN07982679	BM525	Deltaproteobacteria bacterium
GCA_002869015.1	PKTT00000000	SAMN07982678	BM512	Deltaproteobacteria bacterium
GCA_007713435.1	VMRW00000000	SAMN11950944	SFB-4	Denitromonas halophila
GCA_007713535.1	VMRU00000000	SAMN11950942	SFB-5	Denitromonas halophila
GCA_007713525.1	VMRR00000000	SAMN11950939	B5	Denitromonas halophila
GCA_007625155.1	VMNK00000000	SAMN11950937	SFB-3	Denitromonas halophila
GCA_007625125.1	VMNJ00000000	SAMN11950936	SFB-2	Denitromonas ohlonensis
GCA_007625205.1	VMNI00000000	SAMN11950935	SFB-1	Denitromonas ohlonensis
GCA_002869145.1	PKTM00000000	SAMN07982671	BM701	Denitrovibrio sp.
GCA_002869185.1	PKTN00000000	SAMN07982672	BM704	Denitrovibrio sp.
GCA_002868985.1	PKTV00000000	SAMN07982681	BM005	Desulfobacteraceae bacterium
GCA_002899795.1	PPDG00000000	SAMN07982680	BM002	Desulfobacteraceae bacterium
GCA_002868955.1	PKTW00000000	SAMN07982682	BM004	Desulfobulbaceae bacterium
GCA_002868945.1	PKTX00000000	SAMN07982683	BM506	Desulfobulbaceae bacterium
GCA_002868925.1	PKTZ00000000	SAMN07982685	BM302	Desulfuromonas sp.
GCA_002868905.1	PKUA00000000	SAMN07982686	BM304	Desulfuromonas sp.
GCA_002868865.1	PKUC00000000	SAMN07982688	BM508	Desulfuromonas sp.
GCA_002868845.1	PKUB00000000	SAMN07982687	BM501	Desulfuromonas sp.
GCA_002869725.1	PKTY00000000	SAMN07982684	BM103	Desulfuromonas sp.
GCA_002869695.1	PKUD00000000	SAMN07982689	BM509	Desulfuromonas sp.
GCA_002869685.1	PKUE00000000	SAMN07982690	BM513	Desulfuromonas sp.
GCA_002869665.1	PKUG00000000	SAMN07982692	BM522	Desulfuromonas sp.
GCA_002869605.1	PKUI00000000	SAMN07982694	BM709	Desulfuromonas sp.
GCA_002869635.1	PKUF00000000	SAMN07982691	BM515	Desulfuromonas sp.
GCA_002869615.1	PKUH00000000	SAMN07982693	BM707	Desulfuromonas sp.
GCA_002869085.1	PKTQ00000000	SAMN07982675	BM303	Hyphomicrobiales bacterium
GCA_002869065.1	PKTR00000000	SAMN07982676	BM505	Hyphomicrobiales bacterium
GCA_002869275.1	PKTF00000000	SAMN07982664	BM516	Ignavibacteria bacterium
GCA_002869465.1	PKSW00000000	SAMN07982655	BM514	Marinilabiliales bacterium
GCA_002869435.1	PKSX00000000	SAMN07982656	BM518	Marinilabiliales bacterium
GCA_002869425.1	PKSZ00000000	SAMN07982658	BM523	Marinilabiliales bacterium
GCA_002869405.1	PKSY00000000	SAMN07982657	BM520	Marinilabiliales bacterium
GCA_002869385.1	PKTB00000000	SAMN07982660	BM703	Marinilabiliales bacterium
GCA_002869365.1	PKTA00000000	SAMN07982659	BM524	Marinilabiliales bacterium
GCA_002869315.1	PKTD00000000	SAMN07982662	BM719	Marinilabiliales bacterium
GCA_002869305.1	PKTC00000000	SAMN07982661	BM718	Marinilabiliales bacterium
GCA_007713625.1	VMRX00000000	SAMN11950945	UCB	Marinobacter vinifirmus
GCA_007713455.1	VMRT00000000	SAMN11950941	CAL	Pseudomonas sp.
GCA_002869335.1	PKTE00000000	SAMN07982663	BM715	Salinivirgaceae bacterium
GCA_002868805.1	PKUN00000000	SAMN07982700	BM301	Sedimenticola selenatireducens
GCA_007713585.1	VMRS00000000	SAMN11950940	BK-2	Sedimenticola selenatireducens
GCA_007625115.1	VMNH00000000	SAMN11950934	BK-1	Sedimenticola selenatireducens
GCA_002869585.1	PKUO00000000	SAMN07982701	BM503	Sedimenticola sp.
GCA_007713595.1	VMRY00000000	SAMN11950946	BK-3	Sedimenticola thiotaurini
GCA_002869525.1	PKUL00000000	SAMN07982698	BM702	Sulfurimonas sp.
GCA_002899765.1	PPDH00000000	SAMN07982697	BM502	Sulfurimonas sp.
GCA_002868815.1	PKUP00000000	SAMN07982702	BM517	Vibrio alginolyticus

SRA Data Details

Parameter	Value
Data volume, Gbases	49
Data volume, Mbytes	23176

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bioreactor metagenome

Genome-resolved metagenomics of marine perchlorate-reducing communities

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