freshwater metagenome (ID 487850) - BioProject

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Accession: PRJDB6656 ID: 487850

freshwater metagenome

Culture-independent metagenomic and metaepigenomic analysis of prokaryotes in Lake Biwa, Japan

We conducted metagenomic and metaepigenomic analysis using long Circular Consensus Sequence (CCS) reads generated using the PacBio Sequel platform to profile the freshwater microbiome of Lake Biwa, the largest lake in Japan.

Accession	PRJDB6656
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	freshwater metagenome[Taxonomy ID: 449393] unclassified sequences; metagenomes; ecological metagenomes; freshwater metagenome
Publications	Hiraoka S et al., "Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community.", Nat Commun, 2019 Jan 11;10(1):159
Grants	15J08604, Japan Society for the Promotion of Science
Submission	Registration date: 24-Aug-2018 The University of Tokyo
Relevance	Environmental
Locus Tag Prefix	QZP69

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	409
WGS master	19
SRA Experiments	7
Protein Sequences	27026
Publications
PubMed	1
PMC	1
Other datasets
BioSample	23
Assembly	19

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

19
19

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_003569125.1	BGOG00000000	SAMD00117319	BS4	Acidimicrobiaceae bacterium
GCA_003569305.1	BGOP00000000	SAMD00117328	BS13	Actinomycetota bacterium
GCA_003569265.1	BGON00000000	SAMD00117326	BS11	Actinomycetota bacterium
GCA_003569225.1	BGOL00000000	SAMD00117324	BS9	Actinomycetota bacterium
GCA_003569085.1	BGOE00000000	SAMD00117317	BS2	Actinomycetota bacterium
GCA_003569365.1	BGOS00000000	SAMD00117331	BD1	Anaerolineaceae bacterium
GCA_003569105.1	BGOF00000000	SAMD00117318	BS3	Anaerolineaceae bacterium
GCA_003569325.1	BGOQ00000000	SAMD00117329	BS14	Candidatus Pelagibacterales bacterium
GCA_003569185.1	BGOJ00000000	SAMD00117322	BS7	Candidatus Planktophila sp.
GCA_003569065.1	BGOD00000000	SAMD00117316	BS1	Chloroflexota bacterium
GCA_003569145.1	BGOH00000000	SAMD00117320	BS5	Clavibacter sp.
GCA_003569345.1	BGOR00000000	SAMD00117330	BS15	Filimonas sp.
GCA_003569285.1	BGOO00000000	SAMD00117327	BS12	Methylophilaceae bacterium
GCA_003569705.1	BGOU00000000	SAMD00117333	BD3	Nitrosarchaeum sp.
GCA_003569385.1	BGOT00000000	SAMD00117332	BD2	Nitrospirota bacterium
GCA_003569165.1	BGOI00000000	SAMD00117321	BS6	Opitutia bacterium
GCA_003569245.1	BGOM00000000	SAMD00117325	BS10	Opitutia bacterium
GCA_003569405.1	BGOV00000000	SAMD00117334	BD4	Verrucomicrobiota bacterium
GCA_003569205.1	BGOK00000000	SAMD00117323	BS8	Verrucomicrobiota bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	21
Data volume, Mbytes	23180

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freshwater metagenome

Culture-independent metagenomic and metaepigenomic analysis of prokaryotes in Lake Biwa, Japan

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