Bacteria (ID 273513) - BioProject

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Accession: PRJNA273513 ID: 273513

Bacteria

Bacteria Genome sequencing and assembly

See Genome Information for Salmonella enterica

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Genomic Comparison of Non-typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky isolates from Broiler Chickens

Accession	PRJNA273513
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Dhanani AS et al., "Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens.", PLoS One, 2015;10(6):e0128773
Submission	Registration date: 20-Apr-2015 McGill University and Genome Quebec Innovation Centre
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	9192
WGS master	122
SRA Experiments	258
Protein Sequences	379214
Publications
PubMed	1
PMC	1
Other datasets
BioSample	377
Assembly	122

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

26
96
122

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_003797545.1	RKPN00000000		SAMN10272798	P18 C A7	Enterococcus avium
GCA_003796365.1	RKOO00000000		SAMN10272817	P9 C A21	Enterococcus casseliflavus
GCA_003796805.1	RKNR00000000		SAMN10272858	P16 CL A28	Enterococcus durans
GCA_003797105.1	RKPT00000000		SAMN10272860	P12 C A7	Enterococcus faecalis
GCA_003797045.1	RKPY00000000		SAMN10272845	P7 C A7	Enterococcus faecalis
GCA_003797725.1	RKPW00000000		SAMN10272814	P9 CL A7	Enterococcus faecalis
GCA_003797645.1	RKPZ00000000		SAMN10272797	P5 CL A7	Enterococcus faecalis
GCA_003797595.1	RKPJ00000000		SAMN10272831	P3 CL A14	Enterococcus faecalis
GCA_003796245.1	RKOH00000000		SAMN10272855	P16 CL A21	Enterococcus faecalis
GCA_003796325.1	RKON00000000		SAMN10272818	P9 CL A21	Enterococcus faecalis
GCA_003796195.1	RKOG00000000		SAMN10272789	P17 CL A21	Enterococcus faecalis
GCA_003796135.1	RKOD00000000		SAMN10272840	P3 CL A28	Enterococcus faecalis
GCA_003796085.1	RKNZ00000000		SAMN10272819	P6 C A28	Enterococcus faecalis
GCA_003796965.1	RKOM00000000		SAMN10272788	P10 CL A21	Enterococcus faecalis
GCA_003796605.1	RKMW00000000		SAMN10272871	LIT8 A36'	Enterococcus faecalis
GCA_003796565.1	RKMP00000000		SAMN10272827	LIT15-A36	Enterococcus faecalis
GCA_003796585.1	RKMU00000000		SAMN10272795	LIT10 A36	Enterococcus faecalis
GCA_003796545.1	RKMO00000000		SAMN10272828	LIT15-A36'	Enterococcus faecalis
GCA_003796705.1	RKMY00000000		SAMN10272810	LIT5-A37	Enterococcus faecalis
GCA_003796665.1	RKMT00000000		SAMN10272872	LIT12 A36	Enterococcus faecalis
GCA_003796375.1	RKOR00000000		SAMN10272852	P7 C A21	Enterococcus faecalis
GCA_003795725.1	RKMV00000000		SAMN10272826	LIT9-A36	Enterococcus faecalis
GCA_003795675.1	RKMR00000000		SAMN10272874	LIT13 A36	Enterococcus faecalis
GCA_003795665.1	RKMQ00000000		SAMN10272875	LIT13 A37'	Enterococcus faecalis
GCA_003795925.1	RKNN00000000		SAMN10272843	P3 CL A35	Enterococcus faecalis
GCA_003795755.1	RKMZ00000000		SAMN10272794	LIT2 A36'	Enterococcus faecalis
GCA_003795855.1	RKNK00000000		SAMN10272822	P6 C A35	Enterococcus faecalis
GCA_003795795.1	RKNC00000000		SAMN10272808	P18 C A35	Enterococcus faecium
GCA_003795735.1	RKMX00000000		SAMN10272859	LIT7 A36'	Enterococcus faecium
GCA_003795805.1	RKND00000000		SAMN10272844	P14 CL A35	Enterococcus faecium
GCA_003795975.1	RKNU00000000		SAMN10272866	P12 C A28	Enterococcus faecium
GCA_003795915.1	RKNM00000000		SAMN10272806	P5 C A 35	Enterococcus faecium
GCA_003795845.1	RKNH00000000		SAMN10272791	P10 C A35	Enterococcus faecium
GCA_003795905.1	RKNL00000000		SAMN10272807	P5 CL A 35	Enterococcus faecium
GCA_003795785.1	RKNA00000000		SAMN10272793	LIT2 A36	Enterococcus faecium
GCA_003795685.1	RKMS00000000		SAMN10272873	LIT12 A36'	Enterococcus faecium
GCA_003795885.1	RKNI00000000		SAMN10272824	P9 CL A35	Enterococcus faecium
GCA_003795625.1	RKMM00000000		SAMN10272811	LIT18-A37	Enterococcus faecium
GCA_003796425.1	RKOS00000000		SAMN10272816	P6 CL A21	Enterococcus faecium
GCA_003796405.1	RKOW00000000		SAMN10272835	P3 CL A21	Enterococcus faecium
GCA_003796335.1	RKOQ00000000		SAMN10272853	P7 CL A21	Enterococcus faecium
GCA_003796625.1	RKMN00000000		SAMN10272796	LIT17 A36	Enterococcus faecium
GCA_003796485.1	RKPD00000000		SAMN10272786	P10 CL A14	Enterococcus faecium
GCA_003796465.1	RKPG00000000		SAMN10272849	P7 C A14	Enterococcus faecium
GCA_003796445.1	RKPC00000000		SAMN10272834	P14 C A14	Enterococcus faecium
GCA_003796505.1	RKPH00000000		SAMN10272833	P4 CL A14	Enterococcus faecium
GCA_003796885.1	RKOI00000000		SAMN10272838	P14 C A21	Enterococcus faecium
GCA_003796845.1	RKOC00000000		SAMN10272841	P4 C A28	Enterococcus faecium
GCA_003796865.1	RKNO00000000		SAMN10272842	P3 C A35	Enterococcus faecium
GCA_003796005.1	RKNV00000000		SAMN10272821	P9 CL A28	Enterococcus faecium
GCA_003796015.1	RKNW00000000		SAMN10272857	P7 CL A28	Enterococcus faecium
GCA_003795965.1	RKNP00000000		SAMN10272805	P18 CL A28	Enterococcus faecium
GCA_003796065.1	RKNT00000000		SAMN10272867	P12 CL A28	Enterococcus faecium
GCA_003796265.1	RKOK00000000		SAMN10272864	P12 C A21	Enterococcus faecium
GCA_003796125.1	RKOA00000000		SAMN10272803	P5 CL A 28	Enterococcus faecium
GCA_003796225.1	RKOJ00000000		SAMN10272865	P12 CL A21	Enterococcus faecium
GCA_003796185.1	RKOE00000000		SAMN10272839	P3 C A28	Enterococcus faecium
GCA_003796105.1	RKNY00000000		SAMN10272820	P6 CL A28	Enterococcus faecium
GCA_003796305.1	RKOP00000000		SAMN10272863	P8 C A21	Enterococcus faecium
GCA_003796285.1	RKOL00000000		SAMN10272854	P11 CL A21	Enterococcus faecium
GCA_003797525.1	RKPM00000000		SAMN10272799	P18 CL A7	Enterococcus faecium
GCA_003797665.1	RKPP00000000		SAMN10272848	P16 CL A7	Enterococcus faecium
GCA_003797705.1	RKPV00000000		SAMN10272781	P10 CL A7	Enterococcus faecium
GCA_003797585.1	RKPU00000000		SAMN10272846	P111 CL A7	Enterococcus faecium
GCA_003797025.1	RKPL00000000		SAMN10272783	P2 C A14	Enterococcus faecium
GCA_003797005.1	RKPS00000000		SAMN10272861	P13 C A7	Enterococcus faecium
GCA_003796815.1	RKNS00000000		SAMN10272868	P13 CL A28	Enterococcus faecium
GCA_003796905.1	RKPI00000000		SAMN10272832	P4 C A14	Enterococcus faecium
GCA_003796945.1	RKOF00000000		SAMN10272790	P2 CL A28	Enterococcus faecium
GCA_003796925.1	RKPK00000000		SAMN10272784	P2 CL A14	Enterococcus faecium
GCA_003796685.1	RKNE00000000		SAMN10272870	P12 CL A35	Enterococcus faecium
GCA_003796745.1	RKNF00000000		SAMN10272869	P12 C A35	Enterococcus faecium
GCA_003796765.1	RKNQ00000000		SAMN10272804	P18 C A28	Enterococcus faecium
GCA_003796775.1	RKNG00000000		SAMN10272792	P10 CL A35	Enterococcus faecium
GCA_003796645.1	RKNB00000000		SAMN10272809	LIT1-A37'	Enterococcus faecium
GCA_003796725.1	RKNJ00000000		SAMN10272823	P9 C A35	Enterococcus faecium
GCA_003796515.1	RKML00000000		SAMN10272812	LIT18-A37'	Enterococcus faecium
GCA_003797285.1	RKOT00000000		SAMN10272801	P5 C A 21	Enterococcus faecium
GCA_003797055.1	RKQA00000000		SAMN10272829	P3 C A7	Enterococcus faecium
GCA_003797365.1	RKPA00000000		SAMN10272850	P16 C A14	Enterococcus faecium
GCA_003797325.1	RKOU00000000		SAMN10272837	P4 CL A21	Enterococcus faecium
GCA_003797425.1	RKOZ00000000		SAMN10272851	P16 CL A14	Enterococcus faecium
GCA_003797405.1	RKOX00000000		SAMN10272800	P1 CL A21	Enterococcus faecium
GCA_003797435.1	RKOY00000000		SAMN10272787	P17 C A14	Enterococcus faecium
GCA_003797505.1	RKPE00000000		SAMN10272785	P10 C A14	Enterococcus faecium
GCA_003797485.1	RKPF00000000		SAMN10272862	P8 C A14	Enterococcus gallinarum
GCA_003797465.1	RKPB00000000		SAMN10272815	P15 C A14	Enterococcus gallinarum
GCA_003797625.1	RKPQ00000000		SAMN10272847	P16 C A7	Enterococcus gallinarum
GCA_003796985.1	RKPO00000000		SAMN10272782	P17 C A7	Enterococcus gallinarum
GCA_003797555.1	RKPX00000000		SAMN10272813	P9 C A7	Enterococcus gallinarum
GCA_003797685.1	RKPR00000000		SAMN10272830	P14 CL A7	Enterococcus hirae
GCA_003797335.1	RKOV00000000		SAMN10272836	P4 C A21	Enterococcus hirae
GCA_003796165.1	RKOB00000000		SAMN10272802	P5 C A 28	Enterococcus hirae
GCA_003796045.1	RKNX00000000		SAMN10272856	P7 C A28	Enterococcus hirae
GCA_002027685.1	MWVM00000000	3	SAMN06349173	LEN03-5497-2	Escherichia coli O157:H7
GCA_002027645.1	MWVL00000000	3	SAMN06349172	LEN02-9121-1	Escherichia coli O157:H7
GCA_002027605.1	MWVK00000000	3	SAMN06349171	LEN02-0647-1	Escherichia coli O157:H7
GCA_000974205.1	LAPK00000000		SAMN03293352	SALB-47-2	Salmonella enterica subsp. enterica serovar Heidelberg
GCA_000974215.1	LAPO00000000		SAMN03293333	SALF-297-3	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_000974175.1	LAPJ00000000		SAMN03293349	SALB-46	Salmonella enterica subsp. enterica serovar Heidelberg
GCA_000974165.1	LAPI00000000		SAMN03293350	SALB-159-4	Salmonella enterica subsp. enterica serovar Heidelberg
GCA_000974135.1	LAPE00000000		SAMN03293348	ABBSB1121-1	Salmonella enterica subsp. enterica serovar Hadar
GCA_000974125.1	LAPD00000000		SAMN03293341	ABBSB1116-2	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_000974095.1	LAPC00000000		SAMN03293332	ABBSB1113-1	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_000974085.1	LAOW00000000		SAMN03293353	ABB1087-1	Salmonella enterica subsp. enterica serovar Kentucky
GCA_000974045.1	LAOU00000000		SAMN03293343	ABB07-SB3071	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_000974015.1	LAPN00000000		SAMN03293336	SALF-297-2	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_000974035.1	LAPQ00000000		SAMN03293337	SALI-436-3	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_000974005.1	LAPH00000000		SAMN03293338	ABBSB1218-1	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_000973985.1	LAPF00000000		SAMN03293345	ABBSB1189-1	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_000973955.1	LAPB00000000		SAMN03293344	ABBSB1050-2	Salmonella enterica subsp. enterica serovar Thompson
GCA_000973905.1	LAOT00000000		SAMN03293355	ABB07-SB3057-2	Salmonella enterica subsp. enterica serovar Kentucky
GCA_000973935.1	LAOY00000000		SAMN03293342	ABBSB1004-1	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_000973915.1	LAOX00000000		SAMN03293340	ABB1162-2	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_000973885.1	LAPP00000000		SAMN03293334	SALH-394-2	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_000973785.1	LAOS00000000		SAMN03293351	ABB07-SB3031	Salmonella enterica subsp. enterica serovar Heidelberg
GCA_000973845.1	LAPM00000000		SAMN03293339	SALF-276-1	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_000973835.1	LAPL00000000		SAMN03293354	SALC-205-3	Salmonella enterica subsp. enterica serovar Kentucky
GCA_000973815.1	LAPG00000000		SAMN03293335	ABBSB1205-1	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_000973755.1	LAOZ00000000		SAMN03293356	ABBSB1008-2	Salmonella enterica subsp. enterica serovar Kentucky
GCA_000973775.1	LAOV00000000		SAMN03293346	ABB1048-1	Salmonella enterica subsp. enterica serovar Hadar
GCA_000973745.1	LAPA00000000		SAMN03293347	ABBSB1020-2	Salmonella enterica subsp. enterica serovar Hadar

SRA Data Details

Parameter	Value
Data volume, Gbases	49
Data volume, Mbytes	30373

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