Streptococcus (ID 480251) - BioProject

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Accession: PRJNA480251 ID: 480251

Streptococcus

Genomic characterization of diverse oral streptococci

A selection of low-passage clinical oral streptococci isolates were whole-genome shotgun sequenced for genotype-phenotype association studies

Accession	PRJNA480251
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Streptococcus[Taxonomy ID: 1301] Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Grants	"Probiotics that moderate pH and antagonize pathogens to promote oral health" (Grant ID R01DE25832, National Institute of Dental and Craniofacial Research)
Submission	Registration date: 12-Dec-2018 Clemson University
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	7443
WGS master	113
SRA Experiments	114
Protein Sequences	227923
Other datasets
BioSample	114
Assembly	113

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

113
113

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_003943625.1	RQOY00000000	SAMN09631676	A13	Streptococcus australis
GCA_003943615.1	RJPZ00000000	SAMN09631677	G1	Streptococcus australis
GCA_003943535.1	RJPU00000000	SAMN09631682	BCC13	Streptococcus cristatus
GCA_003943515.1	RJPT00000000	SAMN09631683	BCC41	Streptococcus cristatus
GCA_003943505.1	RJPS00000000	SAMN09631684	A52	Streptococcus cristatus
GCA_003943455.1	RJPL00000000	SAMN09631691	BCA15	Streptococcus cristatus
GCA_003943465.1	RJPR00000000	SAMN09631685	A53	Streptococcus cristatus
GCA_003943435.1	RJPP00000000	SAMN09631687	A55	Streptococcus cristatus
GCA_003943815.1	RJNA00000000	SAMN09631764	BCC51	Streptococcus cristatus
GCA_003944245.1	RJPM00000000	SAMN09631690	BCA6	Streptococcus cristatus
GCA_003944225.1	RJPN00000000	SAMN09631689	BCA4	Streptococcus cristatus
GCA_003944315.1	RJPQ00000000	SAMN09631686	A54	Streptococcus cristatus
GCA_003944305.1	RJPO00000000	SAMN09631688	A56	Streptococcus cristatus
GCA_003944155.1	RJPE00000000	SAMN09631702	BCC57	Streptococcus gordonii
GCA_003944135.1	RJPF00000000	SAMN09631700	BCC29	Streptococcus gordonii
GCA_003944115.1	RJPD00000000	SAMN09631703	BCC62	Streptococcus gordonii
GCA_003944105.1	RJPB00000000	SAMN09631705	A10	Streptococcus gordonii
GCA_003944075.1	RJOT00000000	SAMN09631714	BCA14	Streptococcus gordonii
GCA_003944065.1	RJOS00000000	SAMN09631715	BCA22	Streptococcus gordonii
GCA_003943345.1	RJVY00000000	SAMN09631698	BCC09	Streptococcus gordonii
GCA_003943355.1	RJPG00000000	SAMN09631699	BCC27	Streptococcus gordonii
GCA_003943305.1	RJVX00000000	SAMN09631701	BCC32	Streptococcus gordonii
GCA_003943295.1	RJPC00000000	SAMN09631704	KLC06	Streptococcus gordonii
GCA_003943285.1	RJPA00000000	SAMN09631706	A11	Streptococcus gordonii
GCA_003943245.1	RJOY00000000	SAMN09631708	A7	Streptococcus gordonii
GCA_003943255.1	RJOZ00000000	SAMN09631707	A9	Streptococcus gordonii
GCA_003943215.1	RJOX00000000	SAMN09631709	A8	Streptococcus gordonii
GCA_003943195.1	RJOW00000000	SAMN09631711	BCA7	Streptococcus gordonii
GCA_003943175.1	RJOU00000000	SAMN09631713	BCA10	Streptococcus gordonii
GCA_003943155.1	RJOR00000000	SAMN09631716	BCC01	Streptococcus intermedius
GCA_003943145.1	RJOP00000000	SAMN09631718	BCC47	Streptococcus intermedius
GCA_003943125.1	RJOO00000000	SAMN09631719	KLC02	Streptococcus intermedius
GCA_003943095.1	RJOM00000000	SAMN09631721	A2	Streptococcus intermedius
GCA_003943085.1	RJOL00000000	SAMN09631722	A3	Streptococcus intermedius
GCA_003943045.1	RJOJ00000000	SAMN09631724	A5	Streptococcus intermedius
GCA_003943035.1	RJOI00000000	SAMN09631725	A6	Streptococcus intermedius
GCA_003944025.1	RJOQ00000000	SAMN09631717	BCC34	Streptococcus intermedius
GCA_003944015.1	RJON00000000	SAMN09631720	KLC09	Streptococcus intermedius
GCA_003944005.1	RJOK00000000	SAMN09631723	A4	Streptococcus intermedius
GCA_003943965.1	RJOA00000000	SAMN09631735	BCC49	Streptococcus mitis
GCA_003943955.1	RJOF00000000	SAMN09631730	BCC33	Streptococcus mitis
GCA_003943935.1	RJOB00000000	SAMN09631734	BCC45	Streptococcus mitis
GCA_003943905.1	RJNS00000000	SAMN09631746	BCA11	Streptococcus mitis
GCA_003943915.1	RJNT00000000	SAMN09631745	KLC12	Streptococcus mitis
GCA_003943605.1	RJPY00000000	SAMN09631678	BCC08	Streptococcus mitis
GCA_003944325.1	RJPX00000000	SAMN09631679	BCC17	Streptococcus mitis
GCA_003942995.1	RJOH00000000	SAMN09631728	BCC06	Streptococcus mitis
GCA_003942965.1	RJOG00000000	SAMN09631729	BCC07	Streptococcus mitis
GCA_003942945.1	RJOE00000000	SAMN09631731	BCC36	Streptococcus mitis
GCA_003942915.1	RJOD00000000	SAMN09631732	BCC40	Streptococcus mitis
GCA_003942885.1	RJOC00000000	SAMN09631733	BCC44	Streptococcus mitis
GCA_003943575.1	RJPW00000000	SAMN09631680	BCC22	Streptococcus mitis
GCA_003943555.1	RJPV00000000	SAMN09631681	BCC30	Streptococcus mitis
GCA_003942795.1	RJNY00000000	SAMN09631739	BCC60	Streptococcus mitis
GCA_003942765.1	RJNW00000000	SAMN09631741	KLC01	Streptococcus mitis
GCA_003942775.1	RJNX00000000	SAMN09631740	BCC65	Streptococcus mitis
GCA_003942715.1	RJNV00000000	SAMN09631743	KLC07	Streptococcus mitis
GCA_003942685.1	RJNR00000000	SAMN09631747	BCA12	Streptococcus mitis
GCA_003942695.1	RJNU00000000	SAMN09631744	KLC11	Streptococcus mitis
GCA_003942865.1	RJNZ00000000	SAMN09631737	BCC55	Streptococcus mitis
GCA_003942665.1	RJNQ00000000	SAMN09631748	BCA16	Streptococcus mitis
GCA_003942575.1	RJNH00000000	SAMN09631757	BCC15	Streptococcus mitis
GCA_003942285.1	RJME00000000	SAMN09631786	BCA18	Streptococcus oralis
GCA_003942635.1	RJNM00000000	SAMN09631752	BCC50	Streptococcus oralis
GCA_003942585.1	RJNK00000000	SAMN09631754	BCC59	Streptococcus oralis
GCA_003942565.1	RJNI00000000	SAMN09631756	BCA21	Streptococcus oralis
GCA_003942785.1	RMVI00000000	SAMN09631742	KLC05	Streptococcus oralis
GCA_003942675.1	RJNN00000000	SAMN09631751	BCC38	Streptococcus oralis
GCA_003942805.1	RMVJ00000000	SAMN09631738	BCC58	Streptococcus oralis
GCA_003942875.1	RMVK00000000	SAMN09631736	BCC52	Streptococcus oralis
GCA_003942985.1	RMVL00000000	SAMN09631727	BCC02	Streptococcus oralis
GCA_003943005.1	RMVM00000000	SAMN09631726	BCA19	Streptococcus oralis
GCA_003943395.1	RJPJ00000000	SAMN09631694	BCC12	Streptococcus oralis
GCA_003943415.1	RJPK00000000	SAMN09631693	BCC10	Streptococcus oralis
GCA_003943385.1	RJPI00000000	SAMN09631695	BCC26	Streptococcus oralis
GCA_003943875.1	RJNP00000000	SAMN09631749	BCC11	Streptococcus oralis
GCA_003943825.1	RJNJ00000000	SAMN09631755	BCC63	Streptococcus oralis
GCA_003943835.1	RJNO00000000	SAMN09631750	BCC19	Streptococcus oralis
GCA_003943805.1	RJNE00000000	SAMN09631760	BCC35	Streptococcus oralis
GCA_003944235.1	RMVN00000000	SAMN09631692	BCC05	Streptococcus oralis
GCA_003944205.1	RJPH00000000	SAMN09631697	BCA2	Streptococcus oralis subsp. dentisani
GCA_003944215.1	RJVZ00000000	SAMN09631696	BCA1	Streptococcus oralis
GCA_003944395.1	RJMF00000000	SAMN09631785	BCA17	Streptococcus oralis
GCA_003942525.1	RJNG00000000	SAMN09631758	A1	Streptococcus parasanguinis
GCA_003942515.1	RJNF00000000	SAMN09631759	BCC42	Streptococcus salivarius
GCA_003942275.1	RJMN00000000	SAMN09631777	BCC28	Streptococcus sanguinis
GCA_003942265.1	RJMP00000000	SAMN09631775	BCC24	Streptococcus sanguinis
GCA_003942595.1	RJNL00000000	SAMN09631753	BCC53	Streptococcus sanguinis
GCA_003942485.1	RJND00000000	SAMN09631761	BCC37	Streptococcus sanguinis
GCA_003942465.1	RJNC00000000	SAMN09631762	BCC39	Streptococcus sanguinis
GCA_003942475.1	RJNB00000000	SAMN09631763	BCC46	Streptococcus sanguinis
GCA_003942405.1	RJMY00000000	SAMN09631766	BCC61	Streptococcus sanguinis
GCA_003942415.1	RJMX00000000	SAMN09631767	BCC64	Streptococcus sanguinis
GCA_003942375.1	RJMS00000000	SAMN09631772	BCC18	Streptococcus sanguinis
GCA_003942385.1	RJMT00000000	SAMN09631771	BCC16	Streptococcus sanguinis
GCA_003942365.1	RJMR00000000	SAMN09631773	BCC20	Streptococcus sanguinis
GCA_003942305.1	RJMJ00000000	SAMN09631781	KLC08	Streptococcus sanguinis
GCA_003942295.1	RJMO00000000	SAMN09631776	BCC25	Streptococcus sanguinis
GCA_003944405.1	RJMG00000000	SAMN09631784	BCA13	Streptococcus sanguinis
GCA_003944485.1	RJMI00000000	SAMN09631782	KLC10	Streptococcus sanguinis
GCA_003944475.1	RJML00000000	SAMN09631779	KLC03	Streptococcus sanguinis
GCA_003944465.1	RJMK00000000	SAMN09631780	KLC04	Streptococcus sanguinis
GCA_003944415.1	RJMH00000000	SAMN09631783	BCA3	Streptococcus sanguinis
GCA_003944125.1	RJOV00000000	SAMN09631712	BCA9	Streptococcus sanguinis
GCA_003943655.1	RJMM00000000	SAMN09631778	BCC31	Streptococcus sanguinis
GCA_003943785.1	RJMZ00000000	SAMN09631765	BCC54	Streptococcus sanguinis
GCA_003943755.1	RJMW00000000	SAMN09631768	BCC03	Streptococcus sanguinis
GCA_003943735.1	RJMV00000000	SAMN09631769	BCC04	Streptococcus sanguinis
GCA_003943715.1	RJMQ00000000	SAMN09631774	BCC23	Streptococcus sanguinis
GCA_003943705.1	RJMU00000000	SAMN09631770	BCC14	Streptococcus sanguinis
GCA_003943675.1	RJQB00000000	SAMN09631674	G2	Streptococcus sp. A12
GCA_003944345.1	RJQA00000000	SAMN09631675	BCC21	Streptococcus sp. A12
GCA_003944385.1	RJMD00000000	SAMN09631787	BCA20	Streptococcus sp. BCA20

SRA Data Details

Parameter	Value
Data volume, Gbases	21
Data volume, Mbytes	12089

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Streptococcus

Genomic characterization of diverse oral streptococci

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