Enterobacteriaceae (ID 349231) - BioProject

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Accession: PRJNA349231 ID: 349231

Enterobacteriaceae

Carbapenem resistant Escherichia coli among farms

See Genome Information for Escherichia coli

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8911 additional projects are related by organism.

Whole genome sequencing identified common NDM positive E. coli shared among farms, flies/dogs/farmers, providing direct evidence of carbapenem resistant E. coli (CREC) transmission and environmental contamination.

Accession	PRJNA349231
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Enterobacteriaceae[Taxonomy ID: 543] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae
Grants	"973" (Grant ID 2013CB127200, the National Key Basic Research Program of China) "NSFC" (Grant ID 31422055, National Natural Science Foundation of China) "NSFC" (Grant ID 31530076, National Natural Science Foundation of China) "NSFC" (Grant ID 81661138002, National Natural Science Foundation of China)
Submission	Registration date: 8-Dec-2016 College of Veterinary Medicine,China Agricultural University
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	59780
WGS master	216
Protein Sequences	1110680
Other datasets
BioSample	216
Assembly	216

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

194
22
216

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_004127335.1	QFLP00000000	SAMN08998669	DZ3-15B	Enterobacter cloacae
GCA_004127365.1	QFLL00000000	SAMN08998673	3DZ2-1B	Enterobacter cloacae
GCA_004127355.1	QFLO00000000	SAMN08998670	DZ3-3B	Enterobacter cloacae
GCA_004136875.1	QFLR00000000	SAMN08998667	2DZ2F16B1	Enterobacter cloacae complex sp. 2DZ2F16B1
GCA_004137705.1	QFLX00000000	SAMN08998661	2DZ2F20B	Enterobacter cloacae complex sp. 2DZ2F20B
GCA_004136725.1	QFLM00000000	SAMN08998672	2DZ2F2B	Enterobacter cloacae complex sp. 2DZ2F2B
GCA_004136745.1	QFLK00000000	SAMN08998674	3DZ3S2B	Enterobacter cloacae complex sp. 3DZ3S2B
GCA_004136855.1	QFLV00000000	SAMN08998663	4DZ1-17B1	Enterobacter cloacae complex sp. 4DZ1-17B1
GCA_004136775.1	QFLU00000000	SAMN08998664	4DZ3-17B2	Enterobacter cloacae complex sp. 4DZ3-17B2
GCA_004136685.1	QFLT00000000	SAMN08998665	4DZ3-28B	Enterobacter cloacae complex sp. 4DZ3-28B
GCA_004136695.1	QFLS00000000	SAMN08998666	677-3DZ2D5B	Enterobacter cloacae complex sp. 677-3DZ2D5B
GCA_004136785.1	QFLW00000000	SAMN08998662	742-ADZ3-9B	Enterobacter cloacae complex sp. 742-ADZ3-9B
GCA_004136675.1	QFLN00000000	SAMN08998671	743-2DZ2F-22B	Enterobacter cloacae complex sp. 743-2DZ2F-22B
GCA_004136795.1	QFLQ00000000	SAMN08998668	CH23B	Enterobacter cloacae complex sp. CH23B
GCA_004136805.1	QFRV00000000	SAMN08998675	GF14B	Enterobacter cloacae complex sp. GF14B
GCA_002891455.1	MNBK00000000	SAMN05928845	705	Escherichia coli
GCA_001892905.1	MOHZ00000000	SAMN05928932	653	Escherichia coli
GCA_001892865.1	MOHW00000000	SAMN05928929	655	Escherichia coli
GCA_001892845.1	MOHV00000000	SAMN05928928	511	Escherichia coli
GCA_001892835.1	MOHU00000000	SAMN05928927	582	Escherichia coli
GCA_001892825.1	MOHT00000000	SAMN05928926	510	Escherichia coli
GCA_001892795.1	MOHS00000000	SAMN05928925	654	Escherichia coli
GCA_001892765.1	MOHR00000000	SAMN05928924	508	Escherichia coli
GCA_001892755.1	MOHQ00000000	SAMN05928923	503	Escherichia coli
GCA_001892745.1	MOHP00000000	SAMN05928922	507	Escherichia coli
GCA_001892725.1	MOHM00000000	SAMN05928900	544	Escherichia coli
GCA_001892685.1	MOHL00000000	SAMN05928919	626	Escherichia coli
GCA_001892675.1	MOGZ00000000	SAMN05928908	599	Escherichia coli
GCA_001892665.1	MOHD00000000	SAMN05928911	607	Escherichia coli
GCA_001892645.1	MOGX00000000	SAMN05928905	471	Escherichia coli
GCA_001892595.1	MOGN00000000	SAMN05928894	554	Escherichia coli
GCA_001892605.1	MOGS00000000	SAMN05928899	557	Escherichia coli
GCA_001892585.1	MOGK00000000	SAMN05928891	676	Escherichia coli
GCA_001892565.1	MOGI00000000	SAMN05928889	479	Escherichia coli
GCA_001892525.1	MOGE00000000	SAMN05928885	545	Escherichia coli
GCA_001892505.1	MOFX00000000	SAMN05928878	604	Escherichia coli
GCA_001892515.1	MOGB00000000	SAMN05928882	600	Escherichia coli
GCA_001892485.1	MOFV00000000	SAMN05928876	606	Escherichia coli
GCA_001892445.1	MOFS00000000	SAMN05928873	585	Escherichia coli
GCA_001892435.1	MOFR00000000	SAMN05928872	624	Escherichia coli
GCA_001892425.1	MOFP00000000	SAMN05928870	460	Escherichia coli
GCA_001892405.1	MOFN00000000	SAMN05928868	461	Escherichia coli
GCA_001892365.1	MOFM00000000	SAMN05928867	462	Escherichia coli
GCA_001892355.1	MOFI00000000	SAMN05928863	620	Escherichia coli
GCA_001892335.1	MOFL00000000	SAMN05928866	463	Escherichia coli
GCA_001892325.1	MOFH00000000	SAMN05928862	455	Escherichia coli
GCA_001892295.1	MOFG00000000	SAMN05928861	619	Escherichia coli
GCA_001892275.1	MOFE00000000	SAMN05928859	453	Escherichia coli
GCA_001892255.1	MOEZ00000000	SAMN05928854	558	Escherichia coli
GCA_001892245.1	MOEW00000000	SAMN05928851	447	Escherichia coli
GCA_001892205.1	MOHO00000000	SAMN05928921	650	Escherichia coli
GCA_001892215.1	MOEV00000000	SAMN05928850	694	Escherichia coli
GCA_001892185.1	MOHN00000000	SAMN05928920	464	Escherichia coli
GCA_001892145.1	MOHK00000000	SAMN05928918	627	Escherichia coli
GCA_001892135.1	MOHJ00000000	SAMN05928917	628	Escherichia coli
GCA_001892125.1	MOHI00000000	SAMN05928916	465	Escherichia coli
GCA_001892105.1	MOHH00000000	SAMN05928915	466	Escherichia coli
GCA_001892065.1	MOHG00000000	SAMN05928914	467	Escherichia coli
GCA_001892055.1	MOHF00000000	SAMN05928913	630	Escherichia coli
GCA_001892045.1	MOHE00000000	SAMN05928912	468	Escherichia coli
GCA_001892025.1	MOHC00000000	SAMN05928910	574	Escherichia coli
GCA_001891995.1	MOHB00000000	SAMN05928909	629	Escherichia coli
GCA_001891975.1	MOHA00000000	SAMN05928907	583	Escherichia coli
GCA_001891965.1	MOGY00000000	SAMN05928906	586	Escherichia coli
GCA_001891945.1	MOGW00000000	SAMN05928904	472	Escherichia coli
GCA_001891925.1	MOGR00000000	SAMN05928898	475	Escherichia coli
GCA_001891885.1	MOGV00000000	SAMN05928903	473	Escherichia coli
GCA_001891875.1	MOGU00000000	SAMN05928902	634	Escherichia coli
GCA_001891865.1	MOGT00000000	SAMN05928901	474	Escherichia coli
GCA_001891835.1	MOGQ00000000	SAMN05928897	710	Escherichia coli
GCA_001891795.1	MOGO00000000	SAMN05928895	596	Escherichia coli
GCA_001891785.1	MOGM00000000	SAMN05928893	591	Escherichia coli
GCA_001891805.1	MOGP00000000	SAMN05928896	477	Escherichia coli
GCA_001891765.1	MOGL00000000	SAMN05928892	478	Escherichia coli
GCA_001891705.1	MOGH00000000	SAMN05928888	480	Escherichia coli
GCA_001891725.1	MOGJ00000000	SAMN05928890	635	Escherichia coli
GCA_001891695.1	MOGF00000000	SAMN05928886	636	Escherichia coli
GCA_001891685.1	MOGG00000000	SAMN05928887	578	Escherichia coli
GCA_001891655.1	MOGD00000000	SAMN05928884	481	Escherichia coli
GCA_001891625.1	MOGC00000000	SAMN05928883	622	Escherichia coli
GCA_001891605.1	MOFZ00000000	SAMN05928880	623	Escherichia coli
GCA_001891615.1	MOGA00000000	SAMN05928881	704	Escherichia coli
GCA_001891555.1	MOFY00000000	SAMN05928879	678	Escherichia coli
GCA_001891525.1	MOFT00000000	SAMN05928874	459	Escherichia coli
GCA_001891535.1	MOFU00000000	SAMN05928875	458	Escherichia coli
GCA_001891545.1	MOFW00000000	SAMN05928877	457	Escherichia coli
GCA_001891475.1	MOFQ00000000	SAMN05928871	621	Escherichia coli
GCA_001891455.1	MOFK00000000	SAMN05928865	615	Escherichia coli
GCA_001891445.1	MOFJ00000000	SAMN05928864	617	Escherichia coli
GCA_001891465.1	MOFO00000000	SAMN05928869	625	Escherichia coli
GCA_001891395.1	MOFF00000000	SAMN05928860	454	Escherichia coli
GCA_001891375.1	MOFC00000000	SAMN05928857	451	Escherichia coli
GCA_001891385.1	MOFD00000000	SAMN05928858	452	Escherichia coli
GCA_001891365.1	MOFB00000000	SAMN05928856	450	Escherichia coli
GCA_001891315.1	MOEY00000000	SAMN05928853	449	Escherichia coli
GCA_001891305.1	MOFA00000000	SAMN05928855	576	Escherichia coli
GCA_001891295.1	MOEX00000000	SAMN05928852	448	Escherichia coli
GCA_001891285.1	MOEU00000000	SAMN05928849	446	Escherichia coli
GCA_001891235.1	MOET00000000	SAMN05928848	674	Escherichia coli
GCA_001891225.1	MOER00000000	SAMN05928846	616	Escherichia coli
GCA_001891215.1	MOES00000000	SAMN05928847	587	Escherichia coli
GCA_001894715.1	MOLE00000000	SAMN05929015	723	Escherichia coli
GCA_001894705.1	MOLH00000000	SAMN05929018	685	Escherichia coli
GCA_001894685.1	MOLD00000000	SAMN05929014	722	Escherichia coli
GCA_001894645.1	MOLB00000000	SAMN05929012	718	Escherichia coli
GCA_001894625.1	MOKY00000000	SAMN05929009	725	Escherichia coli
GCA_001894635.1	MOLA00000000	SAMN05929011	717	Escherichia coli
GCA_001894585.1	MOKX00000000	SAMN05929008	724	Escherichia coli
GCA_001894565.1	MOKV00000000	SAMN05929006	727	Escherichia coli
GCA_001894555.1	MOKU00000000	SAMN05929005	656	Escherichia coli
GCA_001894545.1	MOKP00000000	SAMN05929000	566	Escherichia coli
GCA_001894475.1	MOKM00000000	SAMN05928997	687	Escherichia coli
GCA_001894505.1	MOKO00000000	SAMN05928999	641	Escherichia coli
GCA_001894495.1	MOKN00000000	SAMN05928998	443	Escherichia coli
GCA_001894465.1	MOKI00000000	SAMN05928993	570	Escherichia coli
GCA_001894415.1	MOKF00000000	SAMN05928990	714	Escherichia coli
GCA_001894425.1	MOJR00000000	SAMN05928976	647	Escherichia coli
GCA_001894395.1	MOJX00000000	SAMN05928983	708	Escherichia coli
GCA_001894385.1	MOJW00000000	SAMN05928981	659	Escherichia coli
GCA_001894325.1	MOJL00000000	SAMN05928970	499	Escherichia coli
GCA_001894335.1	MOJN00000000	SAMN05928973	501	Escherichia coli
GCA_001894315.1	MOJJ00000000	SAMN05928968	584	Escherichia coli
GCA_001894305.1	MOJI00000000	SAMN05928967	632	Escherichia coli
GCA_001894225.1	MOLF00000000	SAMN05929016	719	Escherichia coli
GCA_001894255.1	MOJE00000000	SAMN05928963	498	Escherichia coli
GCA_001894235.1	MOIX00000000	SAMN05928956	493	Escherichia coli
GCA_001894245.1	MOJB00000000	SAMN05928960	495	Escherichia coli
GCA_001894195.1	MOLC00000000	SAMN05929013	721	Escherichia coli
GCA_001894165.1	MOKW00000000	SAMN05929007	728	Escherichia coli
GCA_001894155.1	MOKS00000000	SAMN05929003	513	Escherichia coli
GCA_001894145.1	MOKJ00000000	SAMN05928994	444	Escherichia coli
GCA_001894125.1	MOKE00000000	SAMN05928989	713	Escherichia coli
GCA_001894085.1	MOKC00000000	SAMN05928987	682	Escherichia coli
GCA_001894075.1	MOJU00000000	SAMN05928979	571	Escherichia coli
GCA_001894065.1	MOJS00000000	SAMN05928977	502	Escherichia coli
GCA_001894035.1	MOJQ00000000	SAMN05928975	646	Escherichia coli
GCA_001894025.1	MOJO00000000	SAMN05928972	500	Escherichia coli
GCA_001893985.1	MOJK00000000	SAMN05928969	469	Escherichia coli
GCA_001893995.1	MOJM00000000	SAMN05928971	602	Escherichia coli
GCA_001893955.1	MOJF00000000	SAMN05928964	598	Escherichia coli
GCA_001893935.1	MOJD00000000	SAMN05928962	497	Escherichia coli
GCA_001893915.1	MOJA00000000	SAMN05928959	549	Escherichia coli
GCA_001893905.1	MOIW00000000	SAMN05928955	555	Escherichia coli
GCA_001893875.1	MOIV00000000	SAMN05928954	645	Escherichia coli
GCA_001893865.1	MOLI00000000	SAMN05929019	Ec-03	Escherichia coli
GCA_001893845.1	MOLG00000000	SAMN05929017	720	Escherichia coli
GCA_001893805.1	MOKZ00000000	SAMN05929010	726	Escherichia coli
GCA_001893775.1	MOKT00000000	SAMN05929004	711	Escherichia coli
GCA_001893785.1	MOKR00000000	SAMN05929002	515	Escherichia coli
GCA_001893765.1	MOKQ00000000	SAMN05929001	684	Escherichia coli
GCA_001893715.1	MOKL00000000	SAMN05928996	614	Escherichia coli
GCA_001893695.1	MOKK00000000	SAMN05928995	613	Escherichia coli
GCA_001893705.1	MOKH00000000	SAMN05928992	715	Escherichia coli
GCA_001893685.1	MOKG00000000	SAMN05928991	716	Escherichia coli
GCA_001893635.1	MOKD00000000	SAMN05928988	679	Escherichia coli
GCA_001893615.1	MOKB00000000	SAMN05928986	709	Escherichia coli
GCA_001893625.1	MOKA00000000	SAMN05928985	675	Escherichia coli
GCA_001893605.1	MOJZ00000000	SAMN05928984	680	Escherichia coli
GCA_001893555.1	MOJY00000000	SAMN05928982	660	Escherichia coli
GCA_001893545.1	MOJV00000000	SAMN05928980	658	Escherichia coli
GCA_001893535.1	MOJT00000000	SAMN05928978	648	Escherichia coli
GCA_001893525.1	MOJP00000000	SAMN05928974	601	Escherichia coli
GCA_001893455.1	MOJC00000000	SAMN05928961	496	Escherichia coli
GCA_001893475.1	MOJH00000000	SAMN05928966	633	Escherichia coli
GCA_001893465.1	MOJG00000000	SAMN05928965	116	Escherichia coli
GCA_001893445.1	MOIZ00000000	SAMN05928958	494	Escherichia coli
GCA_001893395.1	MOIY00000000	SAMN05928957	681	Escherichia coli
GCA_001893375.1	MOIQ00000000	SAMN05928949	491	Escherichia coli
GCA_001893385.1	MOII00000000	SAMN05928941	640	Escherichia coli
GCA_001893365.1	MOIU00000000	SAMN05928953	492	Escherichia coli
GCA_001893345.1	MOIH00000000	SAMN05928940	683	Escherichia coli
GCA_001893315.1	MOIB00000000	SAMN05928934	637	Escherichia coli
GCA_001893285.1	MOIT00000000	SAMN05928952	644	Escherichia coli
GCA_001893305.1	MOIE00000000	SAMN05928937	639	Escherichia coli
GCA_001893245.1	MOIS00000000	SAMN05928951	686	Escherichia coli
GCA_001893225.1	MOIR00000000	SAMN05928950	552	Escherichia coli
GCA_001893215.1	MOIP00000000	SAMN05928948	643	Escherichia coli
GCA_001893205.1	MOIO00000000	SAMN05928947	490	Escherichia coli
GCA_001893155.1	MOIM00000000	SAMN05928945	642	Escherichia coli
GCA_001893165.1	MOIN00000000	SAMN05928946	489	Escherichia coli
GCA_001893135.1	MOIL00000000	SAMN05928944	559	Escherichia coli
GCA_001893125.1	MOIJ00000000	SAMN05928942	486	Escherichia coli
GCA_001893105.1	MOIG00000000	SAMN05928939	484	Escherichia coli
GCA_001893085.1	MOIC00000000	SAMN05928935	638	Escherichia coli
GCA_001893035.1	MOIK00000000	SAMN05928943	487	Escherichia coli
GCA_001893025.1	MOIA00000000	SAMN05928933	707	Escherichia coli
GCA_001893015.1	MOIF00000000	SAMN05928938	483	Escherichia coli
GCA_001893005.1	MOID00000000	SAMN05928936	590	Escherichia coli
GCA_001892955.1	MOHX00000000	SAMN05928930	504	Escherichia coli
GCA_001892935.1	MOHY00000000	SAMN05928931	652	Escherichia coli
GCA_004127345.1	QFRE00000000	SAMN08998650	738-3DZ2-22B	Klebsiella pneumoniae
GCA_004127435.1	QFRF00000000	SAMN08998636	737-2DZ2-29W	Klebsiella pneumoniae
GCA_004127885.1	QFMT00000000	SAMN08998638	GF20B	Klebsiella pneumoniae
GCA_004127875.1	QFMU00000000	SAMN08998637	DZ2-27B	Klebsiella pneumoniae
GCA_004127855.1	QFMQ00000000	SAMN08998641	GF48B	Klebsiella pneumoniae
GCA_004127835.1	QFMN00000000	SAMN08998644	DZ1-17B	Klebsiella pneumoniae
GCA_004127845.1	QFMO00000000	SAMN08998643	DZ3-14B	Klebsiella pneumoniae
GCA_004127765.1	QFMH00000000	SAMN08998651	3DZ2-3B	Klebsiella pneumoniae
GCA_004127795.1	QFML00000000	SAMN08998646	DZ2-11B1	Klebsiella pneumoniae
GCA_004127715.1	QFMG00000000	SAMN08998652	3DZ2-7B	Klebsiella pneumoniae
GCA_004127775.1	QFMJ00000000	SAMN08998648	DZ2-13B1	Klebsiella pneumoniae
GCA_004127695.1	QFMB00000000	SAMN08998657	DZ3-25B	Klebsiella pneumoniae
GCA_004127705.1	QFMF00000000	SAMN08998653	775-DZ2-4B	Klebsiella pneumoniae
GCA_004127675.1	QFMR00000000	SAMN08998640	GF34B	Klebsiella pneumoniae
GCA_004127685.1	QFMS00000000	SAMN08998639	GF24B	Klebsiella pneumoniae
GCA_004127615.1	QFMK00000000	SAMN08998647	DZ2-11B2	Klebsiella pneumoniae
GCA_004127575.1	QFME00000000	SAMN08998654	2DZ3F15B	Klebsiella pneumoniae
GCA_004127625.1	QFMM00000000	SAMN08998645	779-DZ2-28B	Klebsiella pneumoniae
GCA_004127595.1	QFMP00000000	SAMN08998642	2DZ2F15B	Klebsiella pneumoniae
GCA_004127585.1	QFMI00000000	SAMN08998649	DZ2-29B	Klebsiella pneumoniae
GCA_004127375.1	QFLZ00000000	SAMN08998659	3DZ3F16B	Klebsiella pneumoniae
GCA_004127485.1	QFMC00000000	SAMN08998656	DZ2-21B	Klebsiella pneumoniae
GCA_004127515.1	QFMA00000000	SAMN08998658	OD29B	Klebsiella pneumoniae
GCA_004127495.1	QFMD00000000	SAMN08998655	DZ2-10B	Klebsiella pneumoniae
GCA_004127475.1	QFLY00000000	SAMN08998660	DZ2-DB	Klebsiella pneumoniae
GCA_004127505.1	QFLJ00000000	SAMN08998676	3DZ2-4SM	Salmonella sp. 3DZ2-4SM

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Enterobacteriaceae

Carbapenem resistant Escherichia coli among farms

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