Mycobacterium (ID 594871) - BioProject

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Accession: PRJDB7717 ID: 594871

Mycobacterium

Genome sequencing of nontuberculosis mycobacteria

Although recent comprehensive genomic studies have contributed to add genomic data for several NTM species (Fedrizzi et al. More...

Accession	PRJDB7717
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Mycobacterium[Taxonomy ID: 1763] Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium
Publications	Matsumoto Y et al., "Comprehensive subspecies identification of 175 nontuberculous mycobacteria species based on 7547 genomic profiles.", Emerg Microbes Infect, 2019;8(1):1043-1053
Submission	Registration date: 6-Feb-2020 Department of Infection Metagenomics, Osaka University

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	111
WGS master	10
Genomic DNA	64
SRA Experiments	126
Protein Sequences	343282
Publications
PubMed	1
PMC	1
Other datasets
BioSample	63
Assembly	63

Assembly details:

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Assembly level

Number of Assemblies

53
1
9
63

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_010723305.1	BLKW00000000		SAMD00153205	JCM 17322	Mycobacterium botniense
GCA_010723575.1	BLKZ00000000		SAMD00153222	JCM 30725	Mycobacterium bourgelatii
GCA_010728725.1		2	SAMD00153181	JCM 12687	Mycobacterium branderi
GCA_010730195.1		1	SAMD00153191	JCM 14738	Mycobacterium conspicuum
GCA_010727945.1		1	SAMD00153177	JCM 12404	Mycobacterium cookii
GCA_010730355.1		1	SAMD00153192	JCM 14740	Mycobacterium florentinum
GCA_010726765.1		2	SAMD00153170	JCM 6399	Mycobacterium gallinarum
GCA_010730745.1		1	SAMD00153194	JCM 14842	Mycobacterium heidelbergense
GCA_010723135.1	BLKU00000000		SAMD00153187	JCM 13573	Mycobacterium kubicae
GCA_010731535.1		1	SAMD00153198	JCM 15657	Mycobacterium lacus
GCA_010731775.1		1	SAMD00153211	JCM 18113	Mycobacterium mantenii
GCA_010731675.1		2	SAMD00153206	JCM 17324	Mycobacterium marseillense
GCA_010731635.1		1	SAMD00153203	JCM 16367	Mycobacterium noviomagense
GCA_010726505.1		1	SAMD00153168	JCM 6391	Mycobacterium novum
GCA_010723415.1	BLKX00000000		SAMD00153214	JCM 18565	Mycobacterium paragordonae
GCA_010731935.1		1	SAMD00153220	JCM 30622	Mycobacterium paraintracellulare
GCA_010731655.1		1	SAMD00153204	JCM 16952	Mycobacterium paraseoulense
GCA_010730575.1		1	SAMD00153193	JCM 14742	Mycobacterium parmense
GCA_010729105.1		1	SAMD00153183	JCM 13016	Mycobacterium saskatchewanense
GCA_010731595.1		1	SAMD00153201	JCM 16018	Mycobacterium seoulense
GCA_010730055.1		1	SAMD00153190	JCM 14233	Mycobacterium shinjukuense
GCA_010728525.1		1	SAMD00153180	JCM 12657	Mycobacterium shottsii
GCA_010727605.1		1	SAMD00153175	JCM 12377	Mycobacterium simiae
GCA_010731715.1		1	SAMD00153208	JCM 17783	Mycobacterium stomatepiae
GCA_010723675.1	BLLA00000000		SAMD00153223	JCM 30726	Mycobacterium timonense
GCA_010731915.1		3	SAMD00153219	JCM 30620	Mycobacteroides abscessus
GCA_010731835.1		1	SAMD00153215	JCM 19956	Mycolicibacillus koreensis
GCA_010723515.1	BLKY00000000		SAMD00153221	JCM 30723	Mycolicibacter algericus
GCA_010729485.1		1	SAMD00153186	JCM 13571	Mycolicibacter hiberniae
GCA_010731755.1		1	SAMD00153210	JCM 17932	Mycolicibacter minnesotensis
GCA_010723225.1	BLKV00000000		SAMD00153200	JCM 16017	Mycolicibacter senuensis
GCA_010727125.1		1	SAMD00153172	JCM 12143	Mycolicibacter terrae
GCA_010722915.1	BLKS00000000		SAMD00153167	JCM 6377	Mycolicibacterium agri
GCA_010726245.1		1	SAMD00153166	JCM 6376	Mycolicibacterium aichiense
GCA_010727325.1		2	SAMD00153173	JCM 12272	Mycolicibacterium alvei
GCA_010731855.1		1	SAMD00153216	JCM 30275	Mycolicibacterium anyangense
GCA_010731815.2		2	SAMD00153213	JCM 18538	Mycolicibacterium arabiense
GCA_010730955.1		2	SAMD00153195	JCM 15296	Mycolicibacterium aubagnense
GCA_010731295.1		2	SAMD00153197	JCM 15653	Mycolicibacterium boenickei
GCA_010731795.1		1	SAMD00153212	JCM 18439	Mycolicibacterium celeriflavum
GCA_010727725.1		1	SAMD00153176	JCM 12403	Mycolicibacterium chitae
GCA_010729895.1		1	SAMD00153189	JCM 13671	Mycolicibacterium confluentis
GCA_010728155.1		1	SAMD00153178	JCM 12405	Mycolicibacterium doricum
GCA_010726645.1		1	SAMD00153169	JCM 6396	Mycolicibacterium duvalii
GCA_010726955.1		1	SAMD00153171	JCM 6405	Mycolicibacterium fallax
GCA_010728925.1		1	SAMD00153182	JCM 12688	Mycolicibacterium gadium
GCA_010731895.1		1	SAMD00153218	JCM 30396	Mycolicibacterium helvum
GCA_010723735.1	BLLB00000000		SAMD00153224	JCM 30996	Mycolicibacterium hippocampi
GCA_010731615.1		1	SAMD00153202	JCM 16366	Mycolicibacterium insubricum
GCA_010731695.1		1	SAMD00153207	JCM 17423	Mycolicibacterium litorale
GCA_010729665.1		2	SAMD00153188	JCM 13574	Mycolicibacterium madagascariense
GCA_010727475.1		1	SAMD00153174	JCM 12375	Mycolicibacterium mageritense
GCA_010731575.1		1	SAMD00153199	JCM 15658	Mycolicibacterium monacense
GCA_010726085.1		1	SAMD00153165	JCM 6375	Mycolicibacterium moriokaense
GCA_010722995.1	BLKT00000000		SAMD00153185	JCM 13392	Mycolicibacterium murale
GCA_010725485.1		1	SAMD00153162	JCM 6367	Mycolicibacterium parafortuitum
GCA_010731115.1		1	SAMD00153196	JCM 15301	Mycolicibacterium phocaicum
GCA_010728325.1		2	SAMD00153179	JCM 12603	Mycolicibacterium poriferae
GCA_010729305.1		1	SAMD00153184	JCM 13323	Mycolicibacterium psychrotolerans
GCA_010725725.1		1	SAMD00153163	JCM 6370	Mycolicibacterium pulveris
GCA_010731875.1		1	SAMD00153217	JCM 30395	Mycolicibacterium sarraceniae
GCA_010731735.1		1	SAMD00153209	JCM 17899	Mycolicibacterium sediminis
GCA_010725885.1		1	SAMD00153164	JCM 6373	Mycolicibacterium tokaiense

SRA Data Details

Parameter	Value
Data volume, Gbases	96
Data volume, Mbytes	73949

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Mycobacterium

Genome sequencing of nontuberculosis mycobacteria

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