Bacteria (ID 608870) - BioProject

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Accession: PRJDB8805 ID: 608870

Bacteria

SAG analysis of mouse fecal flora

Acquisition of single-cell amplified genome using bacteria in mouse feces sample and analysis to determine genome of new strains

Accession	PRJDB8805
Data Type	Genome sequencing and assembly
Scope	Environment
Publications	Chijiiwa R et al., "Single-cell genomics of uncultured bacteria reveals dietary fiber responders in the mouse gut microbiota.", Microbiome, 2020 Jan 23;8(1):5
Submission	Registration date: 1-Apr-2020 Haruko Takeyama Lab., Waseda University

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	12159
WGS master	31
SRA Experiments	346
Protein Sequences	87514
Publications
PubMed	1
PMC	1
Other datasets
BioSample	368
Assembly	31

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

31
31

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_011961105.1	BLMN00000000	SAMD00186989	-	Alistipes sp.
GCA_011960185.1	BLMF00000000	SAMD00186981	-	Bacteroidaceae bacterium
GCA_011959205.1	BLLV00000000	SAMD00186971	-	Bacteroidaceae bacterium
GCA_011958815.1	BLLS00000000	SAMD00186968	-	Bacteroides acidifaciens
GCA_011957885.1	BLMO00000000	SAMD00186191	IMSAG_013	Clostridiales bacterium
GCA_011958665.1	BLMW00000000	SAMD00186428	IMSAG_250	Clostridiales bacterium
GCA_011958165.1	BLMR00000000	SAMD00186227	IMSAG_049	Clostridiales bacterium
GCA_011960865.1	BLML00000000	SAMD00186987	-	Lachnospiraceae bacterium
GCA_011960705.1	BLMK00000000	SAMD00186986	-	Lachnospiraceae bacterium
GCA_011960625.1	BLMJ00000000	SAMD00186985	-	Lachnospiraceae bacterium
GCA_011958345.1	BLMT00000000	SAMD00186363	IMSAG_185	Lachnospiraceae bacterium
GCA_011958585.1	BLMV00000000	SAMD00186427	IMSAG_249	Lachnospiraceae bacterium
GCA_011960065.1	BLME00000000	SAMD00186980	-	Lachnospiraceae bacterium
GCA_011959925.1	BLMD00000000	SAMD00186979	-	Lachnospiraceae bacterium
GCA_011959805.1	BLMC00000000	SAMD00186978	-	Lachnospiraceae bacterium
GCA_011959105.1	BLLU00000000	SAMD00186970	-	Lachnospiraceae bacterium
GCA_011958945.1	BLLT00000000	SAMD00186969	-	Lachnospiraceae bacterium
GCA_011960265.1	BLMG00000000	SAMD00186982	-	Lachnospiraceae bacterium
GCA_011959285.1	BLLW00000000	SAMD00186972	-	Lachnospiraceae bacterium
GCA_011959645.1	BLMA00000000	SAMD00186976	-	Lachnospiraceae bacterium
GCA_011959465.1	BLLY00000000	SAMD00186974	-	Lachnospiraceae bacterium
GCA_011958285.1	BLMS00000000	SAMD00186295	IMSAG_117	Lactobacillaceae bacterium
GCA_011958095.1	BLMQ00000000	SAMD00186222	IMSAG_044	Lactobacillaceae bacterium
GCA_011959745.1	BLMB00000000	SAMD00186977	-	Lactobacillus johnsonii
GCA_011960395.1	BLMH00000000	SAMD00186983	-	Muribaculaceae bacterium
GCA_011960975.1	BLMM00000000	SAMD00186988	-	Muribaculaceae bacterium
GCA_011959405.1	BLLX00000000	SAMD00186973	-	Muribaculaceae bacterium
GCA_011959565.1	BLLZ00000000	SAMD00186975	-	Muribaculaceae bacterium
GCA_011958005.1	BLMP00000000	SAMD00186203	IMSAG_025	Muribaculaceae bacterium
GCA_011958445.1	BLMU00000000	SAMD00186370	IMSAG_192	Muribaculaceae bacterium
GCA_011960505.1	BLMI00000000	SAMD00186984	-	Thomasclavelia cocleata

SRA Data Details

Parameter	Value
Data volume, Gbases	41
Data volume, Mbytes	17873

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SAG analysis of mouse fecal flora

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