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Accession: PRJNA600556 ID: 600556

viral metagenome

Virome of wild and zoo birds

We describe here the metagenomics-derived virome in cloacal swabs of different wild and zoo birds from eight provinces of China.

Accession	PRJNA600556
Data Type	Genome sequencing
Scope	Multiisolate
Organism	viral metagenome[Taxonomy ID: 1070528] unclassified sequences; metagenomes; organismal metagenomes; viral metagenome
Publications (total 3) Less...	Dai Z et al., "Unveiling the Virome of Wild Birds: Exploring CRESS-DNA Viral Dark Matter.", Genome Biol Evol, 2024 Oct 9;16(10) More... Dai Z et al., "Unveiling the Virome of Wild Birds: Exploring CRESS-DNA Viral Dark Matter.", Genome Biol Evol, 2024 Oct 9;16(10) Lu X et al., "Highly diverse RNA viruses and phage sequences concealed within birds.", Microbiol Spectr, 2024 Jul 2;12(7):e0080224 Dai Z et al., "Parvovirus dark matter in the cloaca of wild birds.", Gigascience, 2022 Dec 28;12 Less...
Submission	Registration date: 10-Jan-2020 Jiangsu University

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3686
Genomic DNA	899
Genomic RNA	2787
SRA Experiments	314
Protein Sequences	4935
Publications
PubMed	3
PMC	3
Other datasets
BioSample	1
Assembly	7

Genome assemblies, organelles and plasmids:

Assembly GCA_018591135.1 :

Name	RefSeq	GenBank
	NC_076480.1	MN928911.1

Assembly GCA_018591145.1 :

Name	RefSeq	GenBank
	NC_076481.1	MN928918.1

Assembly GCA_018591155.1 :

Name	RefSeq	GenBank
	NC_076482.1	MN928919.1

Assembly GCA_031167835.1 :

Name	GenBank
	MT138240.1

Assembly GCA_031199765.1 :

Name	GenBank
	MN917674.1

Assembly GCA_031199775.1 :

Name	GenBank
	MN917675.1

Assembly GCA_031199785.1 :

Name	GenBank
	MT138212.1

SRA Data Details

Parameter	Value
Data volume, Gbases	154
Data volume, Mbytes	57568

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BioProject Links for Protein (Select 1836405993) (1)
BioProject
viral metagenome
viral metagenome
Virome of wild and zoo birds

BioProject
Taxonomy Links for Protein (Select 1836406002) (1)
Taxonomy
Taxonomy Links for Protein (Select 1556607546) (1)
Taxonomy
MAG: Dicistroviridae sp. isolate ltt192dic2 genomic sequence
MAG: Dicistroviridae sp. isolate ltt192dic2 genomic sequence
gi|1836406000|gb|MN918748.1|

Nucleotide

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