microbial mat metagenome (ID 684324) - BioProject

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Accession: PRJNA684324 ID: 684324

microbial mat metagenome

Pink berry microbial consortia PacBio metagenome sequencing (Little Sippewissett 2011)

Pink berry microbial consortia are a macroscopic microbial aggregates dominated by sulfur cycling species - the purple sulfur bacteria Thiohalocapsa PB-PSB1 and the sulfate reducer Desulfofustis PB-SRB1. More...

Accession	PRJNA684324
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	microbial mat metagenome[Taxonomy ID: 527640] unclassified sequences; metagenomes; ecological metagenomes; microbial mat metagenome
Submission	Registration date: 15-Jan-2021 University of California, Santa Barbara
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	8
WGS master	7
Genomic DNA	1
SRA Experiments	45
Protein Sequences	6286
Other datasets
BioSample	12
Assembly	8
Supplementary data
Base modification	9

Assembly details:

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Assembly level

Number of Assemblies

1
1
6
8

Assembly	WGS	Chrs	BioSample	Isolate	Taxonomy
GCA_016757515.1	JAERIN000000000		SAMN17054543	PB-A3_LS01-2011-a	Alphaproteobacteria bacterium
GCA_016722945.1	JAEQMT000000000		SAMN17301126	PB-SRB1-LS01-2011a	Desulfofustis sp. PB-SRB1
GCA_016762755.1	JAERIL000000000		SAMN17054541	PB-A1_LS01-2011-a	Oceanicaulis sp.
GCA_016762865.1	JAERIO000000000		SAMN17054628	PB-A1_LS01-2011-b	Oceanicaulis sp.
GCA_016762795.1	JAERIM000000000		SAMN17054542	PB-A2_LS01-2011-a	Paracoccaceae bacterium
GCA_016762775.1	JAERIP000000000		SAMN17054635	PB-A2_LS01-2011-b	Paracoccaceae bacterium
GCA_016745215.1		1	SAMN17298418	PB-PSB1-LS01-2011a	Thiohalocapsa sp. PB-PSB1
GCA_016644925.1	JAEPEX000000000		SAMN17228542	-	microbial mat metagenome

SRA Data Details

Parameter	Value
Data volume, Gbases	73
Data volume, Tbytes	0.13

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microbial mat metagenome

Pink berry microbial consortia PacBio metagenome sequencing (Little Sippewissett 2011)

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