Pimephales promelas strain:EPAAWBERC (ID 565199) - BioProject

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Accession: PRJNA565199 ID: 565199

Pimephales promelas strain:EPAAWBERC (fathead minnow)

Pimephales promelas strain:EPAAWBERC Genome sequencing and assembly

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Annotated assembly of the Pimephales promelas (fathead minnow) genome. The project goals were to improve genomic assembly completeness, contiguity and gene annotation. More...

Accession	PRJNA565199
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Pimephales promelas[Taxonomy ID: 90988] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales; Pimephales promelas
Publications	Martinson JW et al., "De Novo Assembly of the Nearly Complete Fathead Minnow Reference Genome Reveals a Repetitive but Compact Genome.", Environ Toxicol Chem, 2022 Feb;41(2):448-461 Liu S et al., "The complete mitochondrial genome of Pimephales promelas (Cypriniformes: Cyprinidae).", Mitochondrial DNA A DNA Mapp Seq Anal, 2016 Sep;27(5):3711-2
Submission	Registration date: 24-Jan-2021 US EPA
Relevance	Model Organism

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	564
WGS master	1
SRA Experiments	101
Protein Sequences	47578
Publications
PubMed	2
PMC	1
Other datasets
BioSample	30
Assembly	1
Supplementary data
BioNano map	3

Assembly details:

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Assembly	Level	WGS	BioSample	Taxonomy
GCA_016745375.1	Scaffold	WIOS00000000	SAMN12875914	Pimephales promelas

SRA Data Details

Parameter	Value
Data volume, Gbases	584
Data volume, Tbytes	0.79

Related RefSeq Project

PRJNA702526 : Pimephales promelas strain:EPAAWBERC RefSeq Genome sequencing and assembly

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Pimephales promelas strain:EPAAWBERC (fathead minnow)

Pimephales promelas strain:EPAAWBERC Genome sequencing and assembly

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