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Accession: PRJNA515894 ID: 515894

Gossypium hirsutum isolate:1008001.06 (cotton)

Gossypium hirsutum isolate:1008001.06 Genome sequencing and assembly

See Genome Information for Gossypium hirsutum
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Genomic resources generated in support of the Gossypium hirsutum genome sequencing project
AccessionPRJNA515894
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismGossypium hirsutum[Taxonomy ID: 3635]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium hirsutum
Publications
  • Chen ZJ et al., "Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement.", Nat Genet, 2020 May;52(5):525-533
  • Lee SB et al., "The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms.", BMC Genomics, 2006 Mar 23;7:61
Grants
  • "Sequencing a Reference-grade Genome of the Domesticated Allotetraploid Cotton: the World's Largest Source of Renewable Textile Fiber" (Grant ID IOS-144552, National Science Foundation)
SubmissionRegistration date: 12-Aug-2019
HudsonAlpha Genome Sequencing Center
RelevanceAgricultural
Locus Tag PrefixERO13
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)1058
WGS master1
SRA Experiments197
Protein Sequences107216
Publications
PubMed2
PMC2
Other datasets
BioSample10
Assembly1
Assembly details:
AssemblyLevelWGSChrsBioSampleTaxonomy
GCA_007990345.1ChromosomeVKGJ00000000
26
SAMN11351207
Gossypium hirsutum
SRA Data Details
ParameterValue
Data volume, Gbases640
Data volume, Tbytes1.53
Related RefSeq Project
PRJNA713846 : Gossypium hirsutum isolate:1008001.06 RefSeq Raw sequence reads

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