U.S. flag

An official website of the United States government

Display Settings:

Format

Send to:

Choose Destination

Links from Protein

Accession: PRJDB11069 ID: 728010

marine metagenome

Metaepigenomic anaysis of pelagic microbial communities

In this study, we conducted metaepigenomic analysis using microbial samples collected from four different depth layers at the North-West Pacific Ocean.
AccessionPRJDB11069
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismmarine metagenome[Taxonomy ID: 408172]
unclassified sequences; metagenomes; ecological metagenomes; marine metagenome
PublicationsHiraoka S et al., "Diverse DNA modification in marine prokaryotic and viral communities.", Nucleic Acids Res, 2022 Feb 22;50(3):1531-1550
Grants
  • JP19K21203, the Japan Society for the Promotion of Science
  • JP20K15444, the Japan Society for the Promotion of Science
SubmissionRegistration date: 7-May-2021
Deep-Sea Bioresource Research Group , Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC)
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)8697
WGS master233
Genomic DNA163
SRA Experiments9
Protein Sequences297763
Publications
PubMed1
PMC1
Other datasets
BioSample400
Assembly396
Assembly details:
Assembly levelNumber of Assemblies
233
233
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_019654855.1ContigBPEO00000000SAMD00291072
Ct9H_300m.P31
GCA_019652795.1ContigBPAV00000000SAMD00290975
Ct9H_90m.P5
GCA_019652915.1ContigBPBB00000000SAMD00290981
Ct9H_90m.P11
GCA_019654755.1ContigBPEJ00000000SAMD00291067
Ct9H_300m.P26
GCA_019654475.1ContigBPDV00000000SAMD00291053
Ct9H_300m.P12
GCA_019653935.1ContigBPCU00000000SAMD00291026
CM1_200m.P26
GCA_019653915.1ContigBPCT00000000SAMD00291025
CM1_200m.P25
GCA_019654735.1ContigBPEI00000000SAMD00291066
Ct9H_300m.P25
GCA_019653295.1ContigBPBU00000000SAMD00291000
Ct9H_90m.P30
GCA_019653035.1ContigBPBH00000000SAMD00290987
Ct9H_90m.P17
GCA_019652895.1ContigBPBA00000000SAMD00290980
Ct9H_90m.P10
GCA_019651975.1ContigBOZJ00000000SAMD00290937
CM1_5m.P97
GCA_019651835.1ContigBOZC00000000SAMD00290930
CM1_5m.P90
GCA_019651015.1ContigBOXN00000000SAMD00290889
CM1_5m.P49
GCA_019649735.1ContigBOWQ00000000SAMD00290866
CM1_5m.P26
GCA_019649375.1ContigBOWA00000000SAMD00290850
CM1_5m.P10
GCA_019649795.1ContigBOWT00000000SAMD00290869
CM1_5m.P29
GCA_019649615.1ContigBOWK00000000SAMD00290860
CM1_5m.P20
GCA_019651235.1ContigBOXY00000000SAMD00290900
CM1_5m.P60
GCA_019651175.1ContigBOXV00000000SAMD00290897
CM1_5m.P57
GCA_019651155.1ContigBOXU00000000SAMD00290896
CM1_5m.P56
GCA_019651375.1ContigBOYF00000000SAMD00290907
CM1_5m.P67
GCA_019650955.1ContigBOXK00000000SAMD00290886
CM1_5m.P46
GCA_019650635.1ContigBOXE00000000SAMD00290880
CM1_5m.P40
GCA_019651935.1ContigBOZH00000000SAMD00290935
CM1_5m.P95
GCA_019651655.1ContigBOYT00000000SAMD00290921
CM1_5m.P81
GCA_019651635.1ContigBOYS00000000SAMD00290920
CM1_5m.P80
GCA_019652035.1ContigBOZM00000000SAMD00290940
CM1_5m.P100
GCA_019652235.1ContigBOZW00000000SAMD00290950
CM1_5m.P110
GCA_019652575.1ContigBPAK00000000SAMD00290964
CM1_5m.P124
GCA_019652475.1ContigBPAF00000000SAMD00290959
CM1_5m.P119
GCA_019652395.1ContigBPAE00000000SAMD00290958
CM1_5m.P118
GCA_019652375.1ContigBPAD00000000SAMD00290957
CM1_5m.P117
GCA_019652335.1ContigBPAB00000000SAMD00290955
CM1_5m.P115
GCA_019652315.1ContigBPAA00000000SAMD00290954
CM1_5m.P114
GCA_019653515.1ContigBPCA00000000SAMD00291006
CM1_200m.P6
GCA_019652535.1ContigBPAI00000000SAMD00290962
CM1_5m.P122
GCA_019652515.1ContigBPAH00000000SAMD00290961
CM1_5m.P121
GCA_019652175.1ContigBOZT00000000SAMD00290947
CM1_5m.P107
GCA_019651195.1ContigBOXW00000000SAMD00290898
CM1_5m.P58
GCA_019652215.1ContigBOZV00000000SAMD00290949
CM1_5m.P109
GCA_019652155.1ContigBOZS00000000SAMD00290946
CM1_5m.P106
GCA_019651775.1ContigBOYZ00000000SAMD00290927
CM1_5m.P87
GCA_019652995.1ContigBPBF00000000SAMD00290985
Ct9H_90m.P15
GCA_019652835.1ContigBPAX00000000SAMD00290977
Ct9H_90m.P7
GCA_019651075.1ContigBOXQ00000000SAMD00290892
CM1_5m.P52
GCA_019651315.1ContigBOYC00000000SAMD00290904
CM1_5m.P64
GCA_019650835.1ContigBOXI00000000SAMD00290884
CM1_5m.P44
GCA_019650355.1ContigBOWX00000000SAMD00290873
CM1_5m.P33
GCA_019653595.1ContigBPCE00000000SAMD00291010
CM1_200m.P10
GCA_019653095.1ContigBPBK00000000SAMD00290990
Ct9H_90m.P20
GCA_019653315.1ContigBPBV00000000SAMD00291001
CM1_200m.P1
GCA_019654035.1ContigBPCZ00000000SAMD00291031
CM1_200m.P31
GCA_019654415.1ContigBPDS00000000SAMD00291050
Ct9H_300m.P9
GCA_019654275.1ContigBPDL00000000SAMD00291043
Ct9H_300m.P2
GCA_019654715.1ContigBPEH00000000SAMD00291065
Ct9H_300m.P24
GCA_019654595.1ContigBPEB00000000SAMD00291059
Ct9H_300m.P18
GCA_019654815.1ContigBPEM00000000SAMD00291070
Ct9H_300m.P29
GCA_019649255.1ContigBOVU00000000SAMD00290844
CM1_5m.P4
GCA_019654575.1ContigBPEA00000000SAMD00291058
Ct9H_300m.P17
GCA_019653835.1ContigBPCP00000000SAMD00291021
CM1_200m.P21
GCA_019653015.1ContigBPBG00000000SAMD00290986
Ct9H_90m.P16
GCA_019650995.1ContigBOXM00000000SAMD00290888
CM1_5m.P48
GCA_019651455.1ContigBOYJ00000000SAMD00290911
CM1_5m.P71
GCA_019651595.1ContigBOYQ00000000SAMD00290918
CM1_5m.P78
GCA_019649235.1ContigBOVT00000000SAMD00290843
CM1_5m.P3
GCA_019651715.1ContigBOYW00000000SAMD00290924
CM1_5m.P84
GCA_019651855.1ContigBOZD00000000SAMD00290931
CM1_5m.P91
GCA_019652675.1ContigBPAP00000000SAMD00290969
CM1_5m.P129
GCA_019653455.1ContigBPBX00000000SAMD00291003
CM1_200m.P3
GCA_019653555.1ContigBPCC00000000SAMD00291008
CM1_200m.P8
GCA_019653535.1ContigBPCB00000000SAMD00291007
CM1_200m.P7
GCA_019653955.1ContigBPCV00000000SAMD00291027
CM1_200m.P27
GCA_019654115.1ContigBPDD00000000SAMD00291035
CM1_200m.P35
GCA_019654075.1ContigBPDB00000000SAMD00291033
CM1_200m.P33
GCA_019654155.1ContigBPDF00000000SAMD00291037
CM1_200m.P37
GCA_019654455.1ContigBPDU00000000SAMD00291052
Ct9H_300m.P11
GCA_019654775.1ContigBPEK00000000SAMD00291068
Ct9H_300m.P27
GCA_019651335.1ContigBOYD00000000SAMD00290905
CM1_5m.P65
GCA_019649675.1ContigBOWN00000000SAMD00290863
CM1_5m.P23
GCA_019652735.1ContigBPAS00000000SAMD00290972
Ct9H_90m.P2
GCA_019654615.1ContigBPEC00000000SAMD00291060
Ct9H_300m.P19
GCA_019654195.1ContigBPDH00000000SAMD00291039
CM1_200m.P39
GCA_019654175.1ContigBPDG00000000SAMD00291038
CM1_200m.P38
GCA_019653855.1ContigBPCQ00000000SAMD00291022
CM1_200m.P22
GCA_019653715.1ContigBPCJ00000000SAMD00291015
CM1_200m.P15
GCA_019653975.1ContigBPCW00000000SAMD00291028
CM1_200m.P28
GCA_019650855.1ContigBOXJ00000000SAMD00290885
CM1_5m.P45
GCA_019651095.1ContigBOXR00000000SAMD00290893
CM1_5m.P53
GCA_019651415.1ContigBOYH00000000SAMD00290909
CM1_5m.P69
GCA_019652655.1ContigBPAO00000000SAMD00290968
CM1_5m.P128
GCA_019652715.1ContigBPAR00000000SAMD00290971
Ct9H_90m.P1
GCA_019652975.1ContigBPBE00000000SAMD00290984
Ct9H_90m.P14
GCA_019651675.1ContigBOYU00000000SAMD00290922
CM1_5m.P82
GCA_019651615.1ContigBOYR00000000SAMD00290919
CM1_5m.P79
GCA_019652135.1ContigBOZR00000000SAMD00290945
CM1_5m.P105
GCA_019650975.1ContigBOXL00000000SAMD00290887
CM1_5m.P47
GCA_019650755.1ContigBOXG00000000SAMD00290882
CM1_5m.P42
GCA_019654055.1ContigBPDA00000000SAMD00291032
CM1_200m.P32
GCA_019653215.1ContigBPBQ00000000SAMD00290996
Ct9H_90m.P26
GCA_019653175.1ContigBPBO00000000SAMD00290994
Ct9H_90m.P24
GCA_019653155.1ContigBPBN00000000SAMD00290993
Ct9H_90m.P23
GCA_019653115.1ContigBPBL00000000SAMD00290991
Ct9H_90m.P21
GCA_019654435.1ContigBPDT00000000SAMD00291051
Ct9H_300m.P10
GCA_019654835.1ContigBPEN00000000SAMD00291071
Ct9H_300m.P30
GCA_019649215.1ContigBOVS00000000SAMD00290842
CM1_5m.P2
GCA_019649195.1ContigBOVR00000000SAMD00290841
CM1_5m.P1
GCA_019649355.1ContigBOVZ00000000SAMD00290849
CM1_5m.P9
GCA_019649335.1ContigBOVY00000000SAMD00290848
CM1_5m.P8
GCA_019649295.1ContigBOVW00000000SAMD00290846
CM1_5m.P6
GCA_019649575.1ContigBOWI00000000SAMD00290858
CM1_5m.P18
GCA_019650735.1ContigBOXF00000000SAMD00290881
CM1_5m.P41
GCA_019651535.1ContigBOYN00000000SAMD00290915
CM1_5m.P75
GCA_019652755.1ContigBPAT00000000SAMD00290973
Ct9H_90m.P3
GCA_019652055.1ContigBOZN00000000SAMD00290941
CM1_5m.P101
GCA_019651695.1ContigBOYV00000000SAMD00290923
CM1_5m.P83
GCA_019651215.1ContigBOXX00000000SAMD00290899
CM1_5m.P59
GCA_019649855.1ContigBOWW00000000SAMD00290872
CM1_5m.P32
GCA_019650435.1ContigBOXA00000000SAMD00290876
CM1_5m.P36
GCA_019652075.1ContigBOZO00000000SAMD00290942
CM1_5m.P102
GCA_019652275.1ContigBOZY00000000SAMD00290952
CM1_5m.P112
GCA_019650375.1ContigBOWY00000000SAMD00290874
CM1_5m.P34
GCA_019649835.1ContigBOWV00000000SAMD00290871
CM1_5m.P31
GCA_019649595.1ContigBOWJ00000000SAMD00290859
CM1_5m.P19
GCA_019649545.1ContigBOWH00000000SAMD00290857
CM1_5m.P17
GCA_019649655.1ContigBOWM00000000SAMD00290862
CM1_5m.P22
GCA_019649715.1ContigBOWP00000000SAMD00290865
CM1_5m.P25
GCA_019649415.1ContigBOWC00000000SAMD00290852
CM1_5m.P12
GCA_019649395.1ContigBOWB00000000SAMD00290851
CM1_5m.P11
GCA_019652195.1ContigBOZU00000000SAMD00290948
CM1_5m.P108
GCA_019652115.1ContigBOZQ00000000SAMD00290944
CM1_5m.P104
GCA_019652095.1ContigBOZP00000000SAMD00290943
CM1_5m.P103
GCA_019652635.1ContigBPAN00000000SAMD00290967
CM1_5m.P127
GCA_019651955.1ContigBOZI00000000SAMD00290936
CM1_5m.P96
GCA_019651755.1ContigBOYY00000000SAMD00290926
CM1_5m.P86
GCA_019651815.1ContigBOZB00000000SAMD00290929
CM1_5m.P89
GCA_019652815.1ContigBPAW00000000SAMD00290976
Ct9H_90m.P6
GCA_019652775.1ContigBPAU00000000SAMD00290974
Ct9H_90m.P4
GCA_019652615.1ContigBPAM00000000SAMD00290966
CM1_5m.P126
GCA_019652595.1ContigBPAL00000000SAMD00290965
CM1_5m.P125
GCA_019652555.1ContigBPAJ00000000SAMD00290963
CM1_5m.P123
GCA_019651255.1ContigBOXZ00000000SAMD00290901
CM1_5m.P61
GCA_019651295.1ContigBOYB00000000SAMD00290903
CM1_5m.P63
GCA_019654515.1ContigBPDX00000000SAMD00291055
Ct9H_300m.P14
GCA_019654495.1ContigBPDW00000000SAMD00291054
Ct9H_300m.P13
GCA_019654635.1ContigBPED00000000SAMD00291061
Ct9H_300m.P20
GCA_019654675.1ContigBPEF00000000SAMD00291063
Ct9H_300m.P22
GCA_019653235.1ContigBPBR00000000SAMD00290997
Ct9H_90m.P27
GCA_019653135.1ContigBPBM00000000SAMD00290992
Ct9H_90m.P22
GCA_019653075.1ContigBPBJ00000000SAMD00290989
Ct9H_90m.P19
GCA_019653055.1ContigBPBI00000000SAMD00290988
Ct9H_90m.P18
GCA_019653195.1ContigBPBP00000000SAMD00290995
Ct9H_90m.P25
GCA_019653695.1ContigBPCI00000000SAMD00291014
CM1_200m.P14
GCA_019653575.1ContigBPCD00000000SAMD00291009
CM1_200m.P9
GCA_019653655.1ContigBPCG00000000SAMD00291012
CM1_200m.P12
GCA_019653775.1ContigBPCM00000000SAMD00291018
CM1_200m.P18
GCA_019653895.1ContigBPCS00000000SAMD00291024
CM1_200m.P24
GCA_019654135.1ContigBPDE00000000SAMD00291036
CM1_200m.P36
GCA_019654235.1ContigBPDJ00000000SAMD00291041
CM1_200m.P41
GCA_019654215.1ContigBPDI00000000SAMD00291040
CM1_200m.P40
GCA_019654395.1ContigBPDR00000000SAMD00291049
Ct9H_300m.P8
GCA_019654355.1ContigBPDP00000000SAMD00291047
Ct9H_300m.P6
GCA_019654315.1ContigBPDN00000000SAMD00291045
Ct9H_300m.P4
GCA_019654295.1ContigBPDM00000000SAMD00291044
Ct9H_300m.P3
GCA_019654535.1ContigBPDY00000000SAMD00291056
Ct9H_300m.P15
GCA_019651515.1ContigBOYM00000000SAMD00290914
CM1_5m.P74
GCA_019651875.1ContigBOZE00000000SAMD00290932
CM1_5m.P92
GCA_019649635.1ContigBOWL00000000SAMD00290861
CM1_5m.P21
GCA_019651495.1ContigBOYL00000000SAMD00290913
CM1_5m.P73
GCA_019651135.1ContigBOXT00000000SAMD00290895
CM1_5m.P55
GCA_019652255.1ContigBOZX00000000SAMD00290951
CM1_5m.P111
GCA_019653635.1ContigBPCF00000000SAMD00291011
CM1_200m.P11
GCA_019653875.1ContigBPCR00000000SAMD00291023
CM1_200m.P23
GCA_019653735.1ContigBPCK00000000SAMD00291016
CM1_200m.P16
GCA_019654695.1ContigBPEG00000000SAMD00291064
Ct9H_300m.P23
GCA_019651115.1ContigBOXS00000000SAMD00290894
CM1_5m.P54
GCA_019651995.1ContigBOZK00000000SAMD00290938
CM1_5m.P98
GCA_019653255.1ContigBPBS00000000SAMD00290998
Ct9H_90m.P28
GCA_019649315.1ContigBOVX00000000SAMD00290847
CM1_5m.P7
GCA_019649815.1ContigBOWU00000000SAMD00290870
CM1_5m.P30
GCA_019651475.1ContigBOYK00000000SAMD00290912
CM1_5m.P72
GCA_019651435.1ContigBOYI00000000SAMD00290910
CM1_5m.P70
GCA_019653675.1ContigBPCH00000000SAMD00291013
CM1_200m.P13
GCA_019653495.1ContigBPBZ00000000SAMD00291005
CM1_200m.P5
GCA_019654335.1ContigBPDO00000000SAMD00291046
Ct9H_300m.P5
GCA_019649695.1ContigBOWO00000000SAMD00290864
CM1_5m.P24
GCA_019649495.1ContigBOWG00000000SAMD00290856
CM1_5m.P16
GCA_019654255.1ContigBPDK00000000SAMD00291042
Ct9H_300m.P1
GCA_019653395.1ContigBPBW00000000SAMD00291002
CM1_200m.P2
GCA_019651055.1ContigBOXP00000000SAMD00290891
CM1_5m.P51
GCA_019651555.1ContigBOYO00000000SAMD00290916
CM1_5m.P76
GCA_019649475.1ContigBOWF00000000SAMD00290855
CM1_5m.P15
GCA_019649775.1ContigBOWS00000000SAMD00290868
CM1_5m.P28
GCA_019649435.1ContigBOWD00000000SAMD00290853
CM1_5m.P13
GCA_019651395.1ContigBOYG00000000SAMD00290908
CM1_5m.P68
GCA_019651355.1ContigBOYE00000000SAMD00290906
CM1_5m.P66
GCA_019651795.1ContigBOZA00000000SAMD00290928
CM1_5m.P88
GCA_019652495.1ContigBPAG00000000SAMD00290960
CM1_5m.P120
GCA_019652295.1ContigBOZZ00000000SAMD00290953
CM1_5m.P113
GCA_019652955.1ContigBPBD00000000SAMD00290983
Ct9H_90m.P13
GCA_019652875.1ContigBPAZ00000000SAMD00290979
Ct9H_90m.P9
GCA_019652855.1ContigBPAY00000000SAMD00290978
Ct9H_90m.P8
GCA_019653815.1ContigBPCO00000000SAMD00291020
CM1_200m.P20
GCA_019654015.1ContigBPCY00000000SAMD00291030
CM1_200m.P30
GCA_019654655.1ContigBPEE00000000SAMD00291062
Ct9H_300m.P21
GCA_019654555.1ContigBPDZ00000000SAMD00291057
Ct9H_300m.P16
GCA_019654795.1ContigBPEL00000000SAMD00291069
Ct9H_300m.P28
GCA_019651735.1ContigBOYX00000000SAMD00290925
CM1_5m.P85
GCA_019651035.1ContigBOXO00000000SAMD00290890
CM1_5m.P50
GCA_019651275.1ContigBOYA00000000SAMD00290902
CM1_5m.P62
GCA_019653475.1ContigBPBY00000000SAMD00291004
CM1_200m.P4
GCA_019649455.1ContigBOWE00000000SAMD00290854
CM1_5m.P14
GCA_019652355.1ContigBPAC00000000SAMD00290956
CM1_5m.P116
GCA_019651575.1ContigBOYP00000000SAMD00290917
CM1_5m.P77
GCA_019650595.1ContigBOXD00000000SAMD00290879
CM1_5m.P39
GCA_019650515.1ContigBOXC00000000SAMD00290878
CM1_5m.P38
GCA_019651895.1ContigBOZF00000000SAMD00290933
CM1_5m.P93
GCA_019654095.1ContigBPDC00000000SAMD00291034
CM1_200m.P34
GCA_019653995.1ContigBPCX00000000SAMD00291029
CM1_200m.P29
GCA_019654375.1ContigBPDQ00000000SAMD00291048
Ct9H_300m.P7
GCA_019654875.1ContigBPEP00000000SAMD00291073
Ct9H_300m.P32
GCA_019652695.1ContigBPAQ00000000SAMD00290970
CM1_5m.P130
GCA_019653755.1ContigBPCL00000000SAMD00291017
CM1_200m.P17
GCA_019650395.1ContigBOWZ00000000SAMD00290875
CM1_5m.P35
GCA_019650455.1ContigBOXB00000000SAMD00290877
CM1_5m.P37
GCA_019650815.1ContigBOXH00000000SAMD00290883
CM1_5m.P43
GCA_019652935.1ContigBPBC00000000SAMD00290982
Ct9H_90m.P12
GCA_019651915.1ContigBOZG00000000SAMD00290934
CM1_5m.P94
GCA_019652015.1ContigBOZL00000000SAMD00290939
CM1_5m.P99
GCA_019653795.1ContigBPCN00000000SAMD00291019
CM1_200m.P19
GCA_019653275.1ContigBPBT00000000SAMD00290999
Ct9H_90m.P29
GCA_019649755.1ContigBOWR00000000SAMD00290867
CM1_5m.P27
GCA_019649275.1ContigBOVV00000000SAMD00290845
CM1_5m.P5
SRA Data Details
ParameterValue
Data volume, Gbases94
Data volume, Mbytes76268

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center