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Accession: PRJNA612761 ID: 612761

Resequencing Western Australian isolates of the Septoria nodorum blotch Wheat pathogen.

Isolates of the fungal plant pathogen Parastagonospora nodorum were sequenced for population analysis and discovery of alleles associated with pathogenicity. More...
AccessionPRJNA612761
Data TypeGenome sequencing and assembly
ScopeMultispecies
Publications
  • Published online: Jones D et al., "Pathogenicity effector candidates and accessory genome revealed by pan-genomic analysis of Parastagonospora nodorum", bioRxiv, 2021;
SubmissionRegistration date: 16-Mar-2020
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)92109
WGS master153
SRA Experiments344
Protein Sequences2650843
Other datasets
BioSample157
Assembly153
Assembly details:
Assembly levelNumber of Assemblies
153
153
AssemblyLevelWGSBioSampleStrainTaxonomy
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_020557385.1ScaffoldJAIRDT000000000SAMN14380907
WAC9178
GCA_020571295.1ScaffoldJAIRGU000000000SAMN14380933
WAC13443
GCA_020571265.1ScaffoldJAIREM000000000SAMN14380934
WAC13446
GCA_020570975.1ScaffoldJAIRGT000000000SAMN14380935
WAC13447
GCA_020570935.1ScaffoldJAIREL000000000SAMN14380937
WAC13524
GCA_020570965.1ScaffoldJAIRGS000000000SAMN14380936
WAC13523
GCA_020570415.1ScaffoldJAIRGO000000000SAMN14380942
WAC13529
GCA_020570405.1ScaffoldJAIREJ000000000SAMN14380943
WAC13530
GCA_020570355.1ScaffoldJAIREH000000000SAMN14380948
WAC13615
GCA_020570685.1ScaffoldJAIRGQ000000000SAMN14380939
WAC13526
GCA_020570525.1ScaffoldJAIREK000000000SAMN14380941
WAC13528
GCA_020570735.1ScaffoldJAIRGR000000000SAMN14380938
WAC13525
GCA_020569685.1ScaffoldJAIRGK000000000SAMN14380953
WAC13632
GCA_020569505.1ScaffoldJAIREE000000000SAMN14380955
WAC13667
GCA_020569895.1ScaffoldJAIRGL000000000SAMN14380952
WAC13631
GCA_020569485.1ScaffoldJAIRGI000000000SAMN14380957
WAC13691
GCA_020570015.1ScaffoldJAIREG000000000SAMN14380949
WAC13616
GCA_020570045.1ScaffoldJAIREI000000000SAMN14380945
WAC13532
GCA_020569495.1ScaffoldJAIRED000000000SAMN14380956
WAC13690
GCA_020569945.1ScaffoldJAIREF000000000SAMN14380951
WAC13630
GCA_020570395.1ScaffoldJAIRGN000000000SAMN14380944
WAC13531
GCA_020568775.1ScaffoldJAIRGG000000000SAMN14380898
WAC4303
GCA_020568635.1ScaffoldJAIRDX000000000SAMN14380901
WAC4648
GCA_020568935.1ScaffoldJAIRGH000000000SAMN14380896
WAC2813
GCA_020569145.1ScaffoldJAIREA000000000SAMN14380894
WAC2285
GCA_020569235.1ScaffoldJAIREB000000000SAMN14380893
WAC2216
GCA_020569515.1ScaffoldJAIRGJ000000000SAMN14380954
WAC13666
GCA_020568945.1ScaffoldJAIRDZ000000000SAMN14380895
WAC2810
GCA_020569285.1ScaffoldJAIREC000000000SAMN14381046
WAC13955
GCA_020568705.1ScaffoldJAIRGF000000000SAMN14380897
WAC4321
GCA_020568765.1ScaffoldJAIRDY000000000SAMN14380899
WAC4319
GCA_020568325.1ScaffoldJAIRDU000000000SAMN14380960
WAC740
GCA_020568465.1ScaffoldJAIRDW000000000SAMN14380900
WAC4808
GCA_020568055.1ScaffoldJAIRGC000000000SAMN14380902
WAC8390
GCA_020568415.1ScaffoldJAIRDV000000000SAMN14380964
WAC739
GCA_020568045.1ScaffoldJAIRGB000000000SAMN14380904
WAC8410
GCA_020568205.1ScaffoldJAIRGE000000000SAMN14380961
WAC741
GCA_020568095.1ScaffoldJAIRGD000000000SAMN14380903
WAC8384
GCA_020567955.1ScaffoldJAIRGA000000000SAMN14380905
WAC8635
GCA_020571605.1ScaffoldJAIRGW000000000SAMN14380930
WAC13403
GCA_020571575.1ScaffoldJAIRGV000000000SAMN14380931
WAC13404
GCA_020570345.1ScaffoldJAIRGM000000000SAMN14380950
WAC13617
GCA_020571895.1ScaffoldJAIREP000000000SAMN14380917
WAC13076
GCA_020571545.1ScaffoldJAIREO000000000SAMN14380932
WAC13405
GCA_020571325.1ScaffoldJAIREN000000000SAMN14380906
WAC13418
GCA_020571815.1ScaffoldJAIRGX000000000SAMN14380929
WAC13402
GCA_020572075.1ScaffoldJAIRHA000000000SAMN14380915
WAC13074
GCA_020570635.1ScaffoldJAIRGP000000000SAMN14380940
WAC13527
GCA_020571885.1ScaffoldJAIRGY000000000SAMN14380918
WAC13077
GCA_020571965.1ScaffoldJAIRGZ000000000SAMN14380916
WAC13075
GCA_020573325.1ScaffoldJAIRET000000000SAMN14381025
Nor_RAC2182_2
GCA_020572985.1ScaffoldJAIRER000000000SAMN14381030
Northam_Magenta
GCA_020572995.1ScaffoldJAIRES000000000SAMN14381029
Northam_Mace2
GCA_020572945.1ScaffoldJAIRHJ000000000SAMN14381031
Northam_WGT
GCA_020572315.1ScaffoldJAIRHB000000000SAMN14380913
WAC13072
GCA_020572645.1ScaffoldJAIRHF000000000SAMN14380909
WAC13068
GCA_020572395.1ScaffoldJAIRHG000000000SAMN14380926
S4FT3A
GCA_020572635.1ScaffoldJAIRHE000000000SAMN14380910
WAC13069
GCA_020572305.1ScaffoldJAIRHC000000000SAMN14380912
WAC13071
GCA_020572345.1ScaffoldJAIRHD000000000SAMN14380911
WAC13070
GCA_020572205.1ScaffoldJAIREQ000000000SAMN14380914
WAC13073
GCA_020573315.1ScaffoldJAIRHM000000000SAMN14381026
Northam_Emu1
GCA_020573595.1ScaffoldJAIRHO000000000SAMN14380947
Mur_S3
GCA_020572675.1ScaffoldJAIRHH000000000SAMN14380925
S1FT3B
GCA_020573605.1ScaffoldJAIRHP000000000SAMN14380946
Mur_51
GCA_020573275.1ScaffoldJAIRHK000000000SAMN14381028
Northam_Mace1
GCA_020573285.1ScaffoldJAIRHL000000000SAMN14381027
Northam_Emu2
GCA_020572955.1ScaffoldJAIRHI000000000SAMN14380924
S1FT3A
GCA_020573725.1ScaffoldJAIREU000000000SAMN14380922
Meck6
GCA_020574145.1ScaffoldJAIREW000000000SAMN14381013
FGW003_5
GCA_020574155.1ScaffoldJAIREX000000000SAMN14381023
FG108
GCA_020574115.1ScaffoldJAIRHU000000000SAMN14380927
Gerald1
GCA_020573625.1ScaffoldJAIRHQ000000000SAMN14380923
Meck8
GCA_020574055.1ScaffoldJAIRHS000000000SAMN14380919
Meck1
GCA_020574085.1ScaffoldJAIRHT000000000SAMN14380928
Gerald4
GCA_020574295.1ScaffoldJAIRHV000000000SAMN14381022
FG107
GCA_020574265.1ScaffoldJAIREY000000000SAMN14381021
FG106
GCA_020573915.1ScaffoldJAIRHR000000000SAMN14380920
Meck3
GCA_020573495.1ScaffoldJAIRHN000000000SAMN14381024
Nor_RAC2182_1
GCA_020573765.1ScaffoldJAIREV000000000SAMN14380921
Meck5
GCA_020578205.1ScaffoldJAIRFS000000000SAMN14381035
16FG159
GCA_020578375.1ScaffoldJAIRFT000000000SAMN14381018
15FG49
GCA_020578295.1ScaffoldJAIRIT000000000SAMN14381005
15FG99
GCA_020578315.1ScaffoldJAIRIS000000000SAMN14381033
16FG06
GCA_020578115.1ScaffoldJAIRFR000000000SAMN14381036
16FG160
GCA_020578105.1ScaffoldJAIRFQ000000000SAMN14381037
16FG161
GCA_020578095.1ScaffoldJAIRFP000000000SAMN14381038
16FG162
GCA_020578075.1ScaffoldJAIRFO000000000SAMN14381039
16FG163_2
GCA_020578085.1ScaffoldJAIRFN000000000SAMN14381040
16FG164
GCA_020577915.1ScaffoldJAIRFM000000000SAMN14381041
16FG165
GCA_020577855.1ScaffoldJAIRFK000000000SAMN14381043
16FG167
GCA_020577905.1ScaffoldJAIRFL000000000SAMN14381042
16FG166
GCA_020577805.1ScaffoldJAIRFJ000000000SAMN14381044
16FG168
GCA_020577795.1ScaffoldJAIRFH000000000SAMN14381047
16FG170
GCA_020575995.1ScaffoldJAIRIP000000000SAMN14380968
201FG209
GCA_020575975.1ScaffoldJAIRFF000000000SAMN14380969
201FG211
GCA_020576185.1ScaffoldJAIRIQ000000000SAMN14380967
201FG208
GCA_020575955.1ScaffoldJAIRIO000000000SAMN14380971
201FG218
GCA_020576365.1ScaffoldJAIRFI000000000SAMN14381045
16FG169
GCA_020576195.1ScaffoldJAIRFG000000000SAMN14381048
16FG171
GCA_020575445.1ScaffoldJAIRIJ000000000SAMN14380974
203FG213
GCA_020575775.1ScaffoldJAIRIN000000000SAMN14380972
201FG219
GCA_020575485.1ScaffoldJAIRIK000000000SAMN14381002
202FG414
GCA_020575645.1ScaffoldJAIRIM000000000SAMN14380995
201FG49
GCA_020575615.1ScaffoldJAIRIL000000000SAMN14380973
202FG212
GCA_020575285.1ScaffoldJAIRIF000000000SAMN14380977
204FG222
GCA_020578585.1ScaffoldJAIRIW000000000SAMN14381015
15FG37
GCA_020574345.1ScaffoldJAIREZ000000000SAMN14380962
53FG143_2
GCA_020575375.1ScaffoldJAIRIG000000000SAMN14380976
204FG221
GCA_020575405.1ScaffoldJAIRII000000000SAMN14380996
203FG58
GCA_020575355.1ScaffoldJAIRIH000000000SAMN14380975
204FG214
GCA_020575195.1ScaffoldJAIRIE000000000SAMN14380978
204FG223
GCA_020574755.1ScaffoldJAIRIA000000000SAMN14380982
205FG225
GCA_020575035.1ScaffoldJAIRFE000000000SAMN14380980
205FG215_2
GCA_020574875.1ScaffoldJAIRIC000000000SAMN14380979
205FG215_1
GCA_020575105.1ScaffoldJAIRID000000000SAMN14381003
205FG142
GCA_020574715.1ScaffoldJAIRFC000000000SAMN14380983
206FG226
GCA_020574615.1ScaffoldJAIRHZ000000000SAMN14380998
205FG63
GCA_020574825.1ScaffoldJAIRIB000000000SAMN14380981
205FG216
GCA_020574725.1ScaffoldJAIRFD000000000SAMN14380997
205FG410
GCA_020574595.1ScaffoldJAIRHX000000000SAMN14380999
206FG66
GCA_020574385.1ScaffoldJAIRFB000000000SAMN14381000
206FG67
GCA_020574405.1ScaffoldJAIRHY000000000SAMN14380984
206FG227
GCA_020574365.1ScaffoldJAIRHW000000000SAMN14380963
53FG143_1
GCA_020574375.1ScaffoldJAIRFA000000000SAMN14381001
206FG68
GCA_020578445.1ScaffoldJAIRIU000000000SAMN14381017
15FG47
GCA_020578265.1ScaffoldJAIRIR000000000SAMN14381034
16FG158
GCA_020578515.1ScaffoldJAIRIV000000000SAMN14381016
15FG38
GCA_020578615.1ScaffoldJAIRIX000000000SAMN14381020
15FG33
GCA_020579855.1ScaffoldJAIRFU000000000SAMN14380966
15FG120
GCA_020579815.1ScaffoldJAIRIZ000000000SAMN14381014
15FG237
GCA_020579835.1ScaffoldJAIRJA000000000SAMN14381012
15FG229
GCA_020580155.1ScaffoldJAIRJF000000000SAMN14380990
15FG115
GCA_020579825.1ScaffoldJAIRIY000000000SAMN14381019
15FG28
GCA_020579845.1ScaffoldJAIRJB000000000SAMN14381004
15FG226
GCA_020580115.1ScaffoldJAIRFV000000000SAMN14380992
15FG117
GCA_020580075.1ScaffoldJAIRJC000000000SAMN14380994
15FG119
GCA_020580085.1ScaffoldJAIRJD000000000SAMN14380993
15FG118
GCA_020580425.1ScaffoldJAIRJH000000000SAMN14380987
15FG112
GCA_020580305.1ScaffoldJAIRJG000000000SAMN14380989
15FG114
GCA_020580415.1ScaffoldJAIRFW000000000SAMN14380988
15FG113
GCA_020581155.1ScaffoldJAIRJN000000000SAMN14381006
15FG100
GCA_020581275.1ScaffoldJAIRJP000000000SAMN14380958
14FG141
GCA_020580665.1ScaffoldJAIRFY000000000SAMN14381011
15FG105
GCA_020581165.1ScaffoldJAIRJO000000000SAMN14381032
15FG04
GCA_020580775.1ScaffoldJAIRJL000000000SAMN14381008
15FG102
GCA_020581045.1ScaffoldJAIRJM000000000SAMN14381007
15FG101
GCA_020580655.1ScaffoldJAIRFX000000000SAMN14380959
15FG109
GCA_020580905.1ScaffoldJAIRFZ000000000SAMN14381009
15FG103
GCA_020580695.1ScaffoldJAIRJK000000000SAMN14381010
15FG104
GCA_020580725.1ScaffoldJAIRJJ000000000SAMN14380965
15FG107
GCA_020580485.1ScaffoldJAIRJI000000000SAMN14380985
15FG110
GCA_020580145.1ScaffoldJAIRJE000000000SAMN14380991
15FG116
SRA Data Details
ParameterValue
Data volume, Gbases342
Data volume, Tbytes0.16

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