hot springs metagenome (ID 887238) - BioProject

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Accession: PRJDB11609 ID: 887238

hot springs metagenome

Hot spring metagenomics

The goal of this study is to determine metabolic potentials of microbial communities in Japanese hot springs.

Accession	PRJDB11609
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	hot springs metagenome[Taxonomy ID: 433727] unclassified sequences; metagenomes; ecological metagenomes; hot springs metagenome
Publications	Kato S et al., "Insights into ecological roles of uncultivated bacteria in Katase hot spring sediment from long-read metagenomics.", Front Microbiol, 2022;13:1045931
Submission	Registration date: 4-Oct-2022 RIKEN-BRC
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2516
WGS master	118
Genomic DNA	14
SRA Experiments	1
Protein Sequences	309854
Publications
PubMed	1
PMC	1
Other datasets
BioSample	133
Assembly	132

Assembly details:

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Assembly level

Number of Assemblies

14
17
101
132

Assembly	WGS	Chrs	BioSample	Isolate	Taxonomy
GCA_026002915.1	BPGG00000000		SAMD00319332	KatS3mg008	Acidimicrobiales bacterium
GCA_026002975.1	BPGJ00000000		SAMD00319335	KatS3mg011	Acidimicrobiia bacterium
GCA_026002955.1	BPGI00000000		SAMD00319334	KatS3mg010	Acidimicrobiia bacterium
GCA_026002935.1	BPGH00000000		SAMD00319333	KatS3mg009	Acidimicrobiia bacterium
GCA_026003035.1	BPGM00000000		SAMD00319338	KatS3mg014	Actinomycetota bacterium
GCA_026003015.1	BPGL00000000		SAMD00319337	KatS3mg013	Actinomycetota bacterium
GCA_026003715.1	BPHU00000000		SAMD00319375	KatS3mg051	Anaerolineae bacterium
GCA_026004275.1	BPIU00000000		SAMD00319404	KatS3mg080	Anoxybacillus sp.
GCA_026003195.1	BPGU00000000		SAMD00319347	KatS3mg023	Armatimonadota bacterium
GCA_026003175.1	BPGT00000000		SAMD00319346	KatS3mg022	Armatimonadota bacterium
GCA_025998755.1		1	SAMD00319348	KatS3mg024	Armatimonadota bacterium
GCA_026003415.1	BPHF00000000		SAMD00319359	KatS3mg035	Bacteroidia bacterium
GCA_026003275.1	BPGY00000000		SAMD00319352	KatS3mg028	Bacteroidia bacterium
GCA_026003255.1	BPGX00000000		SAMD00319351	KatS3mg027	Bacteroidia bacterium
GCA_026003235.1	BPGW00000000		SAMD00319350	KatS3mg026	Bacteroidia bacterium
GCA_026003215.1	BPGV00000000		SAMD00319349	KatS3mg025	Bacteroidia bacterium
GCA_025998875.1		1	SAMD00319365	KatS3mg041	Bacteroidota bacterium
GCA_026003615.1	BPHQ00000000		SAMD00319371	KatS3mg047	Bellilinea sp.
GCA_026003595.1	BPHP00000000		SAMD00319370	KatS3mg046	Bellilinea sp.
GCA_026003575.1	BPHO00000000		SAMD00319369	KatS3mg045	Bellilinea sp.
GCA_026002875.1	BPGE00000000		SAMD00319329	KatS3mg005	Bryobacteraceae bacterium
GCA_026002855.1	BPGD00000000		SAMD00319328	KatS3mg004	Bryobacteraceae bacterium
GCA_026005015.1	BPKG00000000		SAMD00319447	KatS3mg123	Burkholderiales bacterium
GCA_026003655.1	BPHS00000000		SAMD00319373	KatS3mg049	Caldilinea sp.
GCA_026003635.1	BPHR00000000		SAMD00319372	KatS3mg048	Caldilinea sp.
GCA_026004995.1	BPKF00000000		SAMD00319446	KatS3mg122	Caldimonas sp.
GCA_026004255.1	BPIT00000000		SAMD00319403	KatS3mg079	Caloramator sp.
GCA_026004215.1	BPIR00000000		SAMD00319401	KatS3mg077	Candidatus Binatia bacterium
GCA_026004195.1	BPIQ00000000		SAMD00319400	KatS3mg076	Candidatus Binatia bacterium
GCA_026004355.1	BPIZ00000000		SAMD00319410	KatS3mg086	Candidatus Dojkabacteria bacterium
GCA_026004335.1	BPIX00000000		SAMD00319407	KatS3mg083	Candidatus Dojkabacteria bacterium
GCA_025999155.1		1	SAMD00319408	KatS3mg084	Candidatus Dojkabacteria bacterium
GCA_025999215.1		1	SAMD00319409	KatS3mg085	Candidatus Dojkabacteria bacterium
GCA_026003495.1	BPHK00000000		SAMD00319364	KatS3mg040	Candidatus Kapaibacterium sp.
GCA_026003475.1	BPHJ00000000		SAMD00319363	KatS3mg039	Candidatus Kapaibacterium sp.
GCA_026003455.1	BPHI00000000		SAMD00319362	KatS3mg038	Candidatus Kapaibacterium sp.
GCA_026002835.1	BPGC00000000		SAMD00319327	KatS3mg003	Candidatus Nitrosocaldaceae archaeon
GCA_026002795.1	BPGA00000000		SAMD00319325	KatS3mg001	Candidatus Pacearchaeota archaeon
GCA_025999335.1		1	SAMD00319421	KatS3mg097	Candidatus Parcubacteria bacterium
GCA_025999395.1		1	SAMD00319422	KatS3mg098	Candidatus Parcubacteria bacterium
GCA_026004575.1	BPJK00000000		SAMD00319424	KatS3mg100	Candidatus Parcubacteria bacterium
GCA_026004555.1	BPJJ00000000		SAMD00319423	KatS3mg099	Candidatus Parcubacteria bacterium
GCA_026004535.1	BPJI00000000		SAMD00319420	KatS3mg096	Candidatus Parcubacteria bacterium
GCA_026004515.1	BPJH00000000		SAMD00319419	KatS3mg095	Candidatus Parcubacteria bacterium
GCA_026004495.1	BPJG00000000		SAMD00319418	KatS3mg094	Candidatus Parcubacteria bacterium
GCA_026004475.1	BPJF00000000		SAMD00319417	KatS3mg093	Candidatus Parcubacteria bacterium
GCA_026004875.1	BPJZ00000000		SAMD00319439	KatS3mg115	Candidatus Poribacteria bacterium
GCA_025998955.1		1	SAMD00319377	KatS3mg053	Candidatus Roseilinea sp.
GCA_026003755.1	BPHV00000000		SAMD00319376	KatS3mg052	Candidatus Roseilinea sp.
GCA_026004035.1	BPII00000000		SAMD00319392	KatS3mg068	Candidatus Sericytochromatia bacterium
GCA_026005155.1	BPKN00000000		SAMD00319454	KatS3mg130	Candidatus Sumerlaea sp.
GCA_026005175.1	BPKO00000000		SAMD00319455	KatS3mg131	Candidatus Tectomicrobia bacterium
GCA_026002815.1	BPGB00000000		SAMD00319326	KatS3mg002	Candidatus Woesearchaeota archaeon
GCA_026003335.1	BPHB00000000		SAMD00319355	KatS3mg031	Chitinophagales bacterium
GCA_026004015.1	BPIH00000000		SAMD00319389	KatS3mg065	Chloroflexota bacterium
GCA_026003815.1	BPHY00000000		SAMD00319380	KatS3mg056	Chloroflexus sp.
GCA_026003795.1	BPHX00000000		SAMD00319379	KatS3mg055	Chloroflexus sp.
GCA_026003775.1	BPHW00000000		SAMD00319378	KatS3mg054	Chloroflexus sp.
GCA_026003355.1	BPHC00000000		SAMD00319356	KatS3mg032	Cyclobacteriaceae bacterium
GCA_026003915.1	BPID00000000		SAMD00319385	KatS3mg061	Dehalococcoidia bacterium
GCA_026003895.1	BPIC00000000		SAMD00319384	KatS3mg060	Dehalococcoidia bacterium
GCA_026004235.1	BPIS00000000		SAMD00319402	KatS3mg078	Deltaproteobacteria bacterium
GCA_026004895.1	BPKA00000000		SAMD00319440	KatS3mg116	Elioraea sp.
GCA_026004955.1	BPKD00000000		SAMD00319444	KatS3mg120	Erythrobacter sp.
GCA_026003155.1	BPGS00000000		SAMD00319345	KatS3mg021	Fimbriimonadales bacterium
GCA_026003135.1	BPGR00000000		SAMD00319344	KatS3mg020	Fimbriimonadales bacterium
GCA_026003115.1	BPGQ00000000		SAMD00319343	KatS3mg019	Fimbriimonadales bacterium
GCA_026003095.1	BPGP00000000		SAMD00319341	KatS3mg017	Fimbriimonadales bacterium
GCA_026003075.1	BPGO00000000		SAMD00319340	KatS3mg016	Fimbriimonadales bacterium
GCA_026003055.1	BPGN00000000		SAMD00319339	KatS3mg015	Fimbriimonadales bacterium
GCA_025998675.1		1	SAMD00319342	KatS3mg018	Fimbriimonadales bacterium
GCA_025999015.1		1	SAMD00319390	KatS3mg066	Fischerella sp.
GCA_026002995.1	BPGK00000000		SAMD00319336	KatS3mg012	Gaiellaceae bacterium
GCA_026004975.1	BPKE00000000		SAMD00319445	KatS3mg121	Gammaproteobacteria bacterium
GCA_025999455.1		1	SAMD00319441	KatS3mg117	Geminicoccaceae bacterium
GCA_026004715.1	BPJR00000000		SAMD00319431	KatS3mg107	Gemmataceae bacterium
GCA_026004695.1	BPJQ00000000		SAMD00319430	KatS3mg106	Gemmataceae bacterium
GCA_026004675.1	BPJP00000000		SAMD00319429	KatS3mg105	Gemmatales bacterium
GCA_026004295.1	BPIV00000000		SAMD00319405	KatS3mg081	Gemmatimonadales bacterium
GCA_026003835.1	BPHZ00000000		SAMD00319381	KatS3mg057	Herpetosiphonaceae bacterium
GCA_025998815.1		1	SAMD00319361	KatS3mg037	Ignavibacterium sp.
GCA_026003435.1	BPHG00000000		SAMD00319360	KatS3mg036	Ignavibacterium sp.
GCA_026004735.1	BPJS00000000		SAMD00319432	KatS3mg108	Isosphaeraceae bacterium
GCA_026005135.1	BPKM00000000		SAMD00319453	KatS3mg129	Leptospiraceae bacterium
GCA_026005195.1	BPKP00000000		SAMD00319456	KatS3mg132	Limisphaera sp.
GCA_026003675.1	BPHT00000000		SAMD00319374	KatS3mg050	Litorilinea sp.
GCA_026005075.1	BPKJ00000000		SAMD00319450	KatS3mg126	Lysobacteraceae bacterium
GCA_026005055.1	BPKI00000000		SAMD00319449	KatS3mg125	Lysobacterales bacterium
GCA_026004175.1	BPIP00000000		SAMD00319399	KatS3mg075	Meiothermus sp.
GCA_026004155.1	BPIO00000000		SAMD00319398	KatS3mg074	Meiothermus sp.
GCA_026004135.1	BPIN00000000		SAMD00319397	KatS3mg073	Meiothermus sp.
GCA_026004115.1	BPIM00000000		SAMD00319396	KatS3mg072	Meiothermus sp.
GCA_026004095.1	BPIL00000000		SAMD00319395	KatS3mg071	Meiothermus sp.
GCA_026004075.1	BPIK00000000		SAMD00319394	KatS3mg070	Meiothermus sp.
GCA_026004055.1	BPIJ00000000		SAMD00319393	KatS3mg069	Meiothermus sp.
GCA_026004315.1	BPIW00000000		SAMD00319406	KatS3mg082	Nitrospiraceae bacterium
GCA_026004915.1	BPKB00000000		SAMD00319442	KatS3mg118	Paracoccaceae bacterium
GCA_026004595.1	BPJL00000000		SAMD00319425	KatS3mg101	Patescibacteria group bacterium
GCA_026004455.1	BPJE00000000		SAMD00319416	KatS3mg092	Patescibacteria group bacterium
GCA_026004435.1	BPJD00000000		SAMD00319415	KatS3mg091	Patescibacteria group bacterium
GCA_026004415.1	BPJC00000000		SAMD00319414	KatS3mg090	Patescibacteria group bacterium
GCA_026004395.1	BPJB00000000		SAMD00319413	KatS3mg089	Patescibacteria group bacterium
GCA_026004375.1	BPJA00000000		SAMD00319411	KatS3mg087	Patescibacteria group bacterium
GCA_025999275.1		1	SAMD00319412	KatS3mg088	Patescibacteria group bacterium
GCA_026004655.1	BPJO00000000		SAMD00319428	KatS3mg104	Phycisphaerae bacterium
GCA_026004635.1	BPJN00000000		SAMD00319427	KatS3mg103	Phycisphaerales bacterium
GCA_026004795.1	BPJV00000000		SAMD00319435	KatS3mg111	Pirellulaceae bacterium
GCA_026004775.1	BPJU00000000		SAMD00319434	KatS3mg110	Pirellulaceae bacterium
GCA_026004755.1	BPJT00000000		SAMD00319433	KatS3mg109	Pirellulaceae bacterium
GCA_026004855.1	BPJY00000000		SAMD00319438	KatS3mg114	Planctomycetaceae bacterium
GCA_026004835.1	BPJX00000000		SAMD00319437	KatS3mg113	Planctomycetaceae bacterium
GCA_026004615.1	BPJM00000000		SAMD00319426	KatS3mg102	Planctomycetota bacterium
GCA_026005035.1	BPKH00000000		SAMD00319448	KatS3mg124	Porticoccaceae bacterium
GCA_026002895.1	BPGF00000000		SAMD00319330	KatS3mg006	Pyrinomonadaceae bacterium
GCA_026004935.1	BPKC00000000		SAMD00319443	KatS3mg119	Rhodothalassiaceae bacterium
GCA_026003555.1	BPHN00000000		SAMD00319368	KatS3mg044	Rhodothermaceae bacterium
GCA_026003535.1	BPHM00000000		SAMD00319367	KatS3mg043	Rhodothermaceae bacterium
GCA_026003515.1	BPHL00000000		SAMD00319366	KatS3mg042	Rhodothermaceae bacterium
GCA_026003855.1	BPIA00000000		SAMD00319382	KatS3mg058	Roseiflexus sp.
GCA_026003315.1	BPHA00000000		SAMD00319354	KatS3mg030	Saprospiraceae bacterium
GCA_026003295.1	BPGZ00000000		SAMD00319353	KatS3mg029	Saprospiraceae bacterium
GCA_026005115.1	BPKL00000000		SAMD00319452	KatS3mg128	Silanimonas sp.
GCA_026005095.1	BPKK00000000		SAMD00319451	KatS3mg127	Silanimonas sp.
GCA_026003935.1	BPIE00000000		SAMD00319386	KatS3mg062	Tepidiforma sp.
GCA_026003995.1	BPIG00000000		SAMD00319388	KatS3mg064	Tepidiforma sp.
GCA_026003975.1	BPIF00000000		SAMD00319387	KatS3mg063	Tepidiforma sp.
GCA_025998615.1		1	SAMD00319331	KatS3mg007	Thermoanaerobaculum sp.
GCA_026004815.1	BPJW00000000		SAMD00319436	KatS3mg112	Thermogutta sp.
GCA_026003875.1	BPIB00000000		SAMD00319383	KatS3mg059	Thermomicrobiales bacterium
GCA_026003375.1	BPHD00000000		SAMD00319357	KatS3mg033	Thermonema sp.
GCA_025999095.1		1	SAMD00319391	KatS3mg067	Thermosynechococcus sp.
GCA_026003395.1	BPHE00000000		SAMD00319358	KatS3mg034	Vicingaceae bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	28
Data volume, Mbytes	19421

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hot springs metagenome

Hot spring metagenomics

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