Poecile atricapillus isolate:bPoeAtr1 (ID 1004590) - BioProject

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Accession: PRJNA1004590 ID: 1004590

Poecile atricapillus isolate:bPoeAtr1 (Black-capped chickadee)

Poecile atricapillus isolate:bPoeAtr1 RefSeq Genome sequencing and assembly

See Genome Information for Poecile atricapillus

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This project is a component of the Poecile atricapillus (Black-capped chickadee) genome, bPoeAtr1

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5 additional projects are related by organism.

2 additional projects are components of the Poecile atricapillus (Black-capped chickadee) genome, bPoeAtr1.

The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA972429). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.

Accession	PRJNA1004590
Data Type	RefSeq Genome sequencing and assembly
Scope	Monoisolate
Organism	Poecile atricapillus[Taxonomy ID: 48891] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Poecile; Poecile atricapillus
Publications	Rhie A et al., "Towards complete and error-free genome assemblies of all vertebrate species.", Nature, 2021 Apr;592(7856):737-746 Keith Barker F "Mitogenomic data resolve basal relationships among passeriform and passeridan birds.", Mol Phylogenet Evol, 2014 Oct;79:313-24
Submission	Registration date: 17-Jul-2023 Vertebrate Genomes Project - G10K - Rockefeller Vertebrate Genome Lab
Related Resources	Rockefeller University Field Research Center
Relevance	Reference genome
Locus Tag Prefix	RAN74

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	44735
Transcript	44388
Protein Sequences	39653
Publications
PubMed	2
PMC	1
Other datasets
BioSample	1
Assembly	1

Assembly details:

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Assembly	Level	WGS	Chrs	BioSample	Taxonomy
GCF_030490865.1	Chromosome	JAUKOI000000000	42	SAMN35074507	Poecile atricapillus

Related GenBank Project

PRJNA972429 : Poecile atricapillus (Black-capped chickadee) genome, bPoeAtr1, haplotype 1

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Poecile atricapillus isolate:bPoeAtr1 (Black-capped chickadee)

Poecile atricapillus isolate:bPoeAtr1 RefSeq Genome sequencing and assembly

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