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Accession: PRJNA266657 ID: 266657

Escherichia coli

Escherichia coli multidrug-resistant sequencing

See Genome Information for Escherichia coli
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9224 additional projects are related by organism.
The purpose of this study was to sequence multidrug-resistant E. coli farm isolates, and identify genetic determinants contributing to resistance.
AccessionPRJNA266657
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
PublicationsTyson GH et al., "WGS accurately predicts antimicrobial resistance in Escherichia coli.", J Antimicrob Chemother, 2015 Oct;70(10):2763-9
SubmissionRegistration date: 7-Dec-2014
FDA
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)13472
WGS master76
SRA Experiments76
Protein Sequences373860
Publications
PubMed1
Other datasets
BioSample76
Assembly76
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
76
76
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_000798595.1ContigJUDM00000000SAMN03177621
CVM N33601PS
Escherichia coli
GCA_000798575.1ContigJUCJ00000000SAMN03177665
CVM N36404PS
Escherichia coli
GCA_000798555.1ContigJUCD00000000SAMN03177672
CVM N36903PS
Escherichia coli
GCA_000798535.1ContigJUCE00000000SAMN03177671
CVM N36837PS
Escherichia coli
GCA_000798515.1ContigJUDN00000000SAMN03177619
CVM N33561PS
Escherichia coli
GCA_000798495.1ContigJUCC00000000SAMN03177673
CVM N36918PS
Escherichia coli
GCA_000798475.1ContigJUCQ00000000SAMN03177657
CVM N36204PS
Escherichia coli
GCA_000798455.1ContigJUCR00000000SAMN03177656
CVM N36158PS
Escherichia coli
GCA_000798435.1ContigJUDG00000000SAMN03177629
CVM N33719PS
Escherichia coli
GCA_000798415.1ContigJUCU00000000SAMN03177648
CVM N34557PS
Escherichia coli
GCA_000798395.1ContigJUCV00000000SAMN03177647
CVM N34543PS
Escherichia coli
GCA_000798375.1ContigJUBU00000000SAMN03177685
CVM N38826PS
Escherichia coli
GCA_000798355.1ContigJUDH00000000SAMN03177628
CVM N33707PS
Escherichia coli
GCA_000798335.1ContigJUDI00000000SAMN03177627
CVM N33687PS
Escherichia coli
GCA_000798315.1ContigJUDL00000000SAMN03177623
CVM N33633PS
Escherichia coli
GCA_000798295.1ContigJUDJ00000000SAMN03177625
CVM N33651PS
Escherichia coli
GCA_000798275.1ContigJUDK00000000SAMN03177624
CVM N33640PS
Escherichia coli
GCA_000798255.1ContigJUCS00000000SAMN03177653
CVM N36093PS
Escherichia coli
GCA_000798235.1ContigJUCF00000000SAMN03177670
CVM N36834PS
Escherichia coli
GCA_000798215.1ContigJUCG00000000SAMN03177669
CVM N36620PS
Escherichia coli
GCA_000798195.1ContigJUDF00000000SAMN03177631
CVM N33742PS
Escherichia coli
GCA_000798175.1ContigJUBP00000000SAMN03177690
CVM N41586PS
Escherichia coli
GCA_000798155.1ContigJUCZ00000000SAMN03177640
CVM N34077PS
Escherichia coli
GCA_000798135.1ContigJUDA00000000SAMN03177639
CVM N34054PS
Escherichia coli
GCA_000798115.1ContigJUCN00000000SAMN03177661
CVM N36393PS
Escherichia coli
GCA_000798095.1ContigJUCO00000000SAMN03177660
CVM N36312PS
Escherichia coli
GCA_000798075.1ContigJUDC00000000SAMN03177635
CVM N33849PS
Escherichia coli
GCA_000798055.1ContigJUDB00000000SAMN03177637
CVM N33922PS
Escherichia coli
GCA_000798035.1ContigJUCW00000000SAMN03177646
CVM N34352PS
Escherichia coli
GCA_000798015.1ContigJUCX00000000SAMN03177645
CVM N34351PS
Escherichia coli
GCA_000797995.1ContigJUCH00000000SAMN03177668
CVM N36613PS
Escherichia coli
GCA_000797975.1ContigJUCI00000000SAMN03177667
CVM N36609PS
Escherichia coli
GCA_000797955.1ContigJUCL00000000SAMN03177663
CVM N36400PS
Escherichia coli
GCA_000797935.1ContigJUCM00000000SAMN03177662
CVM N36396PS
Escherichia coli
GCA_000797915.1ContigJUBR00000000SAMN03177688
CVM N41498PS
Escherichia coli
GCA_000797895.1ContigJUBS00000000SAMN03177687
CVM N38834PS
Escherichia coli
GCA_000797875.1ContigJUBT00000000SAMN03177686
CVM N38833PS
Escherichia coli
GCA_000797855.1ContigJUDD00000000SAMN03177633
CVM N33806PS
Escherichia coli
GCA_000797835.1ContigJUDE00000000SAMN03177632
CVM N33804PS
Escherichia coli
GCA_000797815.1ContigJUBQ00000000SAMN03177689
CVM N41556PS
Escherichia coli
GCA_000797795.1ContigJUCT00000000SAMN03177649
CVM N34562PS
Escherichia coli
GCA_000797775.1ContigJUCY00000000SAMN03177644
CVM N34322PS
Escherichia coli
GCA_000797755.1ContigJUDP00000000SAMN03177616
CVM N33443PS
Escherichia coli
GCA_000797735.1ContigJUDO00000000SAMN03177617
CVM N33552PS
Escherichia coli
GCA_000797715.1ContigJUBW00000000SAMN03177682
CVM N38795PS
Escherichia coli
GCA_000797695.1ContigJUBX00000000SAMN03177681
CVM N38733PS
Escherichia coli
GCA_000797675.1ContigJUBY00000000SAMN03177680
CVM N38663PS
Escherichia coli
GCA_000797655.1ContigJUCK00000000SAMN03177664
CVM N36401PS
Escherichia coli
GCA_000797585.1ContigJUCA00000000SAMN03177675
CVM N37059PS
Escherichia coli
GCA_000797595.1ContigJUCP00000000SAMN03177659
CVM N36225PS
Escherichia coli
GCA_000797575.1ContigJUBZ00000000SAMN03177676
CVM N37067PS
Escherichia coli
GCA_000797605.1ContigJUCB00000000SAMN03177674
CVM N36963PS
Escherichia coli
GCA_000800495.1ContigJUBV00000000SAMN03177684
CVM N38823PS
Escherichia coli
GCA_000819375.1ContigJWZR00000000SAMN03177615
CVM N33429PS
Escherichia coli
GCA_000819355.1ContigJWZQ00000000SAMN03177618
CVM N33574PS
Escherichia coli
GCA_000819345.1ContigJWZP00000000SAMN03177620
CVM N33591PS
Escherichia coli
GCA_000819325.1ContigJWYY00000000SAMN03177678
CVM N38381PS
Escherichia coli
GCA_000819305.1ContigJWZD00000000SAMN03177654
CVM N36099PS
Escherichia coli
GCA_000819365.1ContigJWZN00000000SAMN03177626
CVM N33653PS
Escherichia coli
GCA_000819285.1ContigJWYW00000000SAMN03177683
CVM N38796PS
Escherichia coli
GCA_000819265.1ContigJWYX00000000SAMN03177679
CVM N38428PS
Escherichia coli
GCA_000819245.1ContigJWYZ00000000SAMN03177677
CVM N37069PS
Escherichia coli
GCA_000819225.1ContigJWZA00000000SAMN03177666
CVM N36601PS
Escherichia coli
GCA_000819205.1ContigJWZB00000000SAMN03177658
CVM N36210PS
Escherichia coli
GCA_000819185.1ContigJWZC00000000SAMN03177655
CVM N36113PS
Escherichia coli
GCA_000819165.1ContigJWZE00000000SAMN03177652
CVM N35912PS
Escherichia coli
GCA_000819145.1ContigJWZF00000000SAMN03177651
CVM N34577PS
Escherichia coli
GCA_000819125.1ContigJWZG00000000SAMN03177650
CVM N34564PS
Escherichia coli
GCA_000819105.1ContigJWZM00000000SAMN03177630
CVM N33720PS
Escherichia coli
GCA_000819085.1ContigJWZO00000000SAMN03177622
CVM N33624PS
Escherichia coli
GCA_000819065.1ContigJWZH00000000SAMN03177643
CVM N34228PS
Escherichia coli
GCA_000819005.1ContigJWZL00000000SAMN03177634
CVM N33825PS
Escherichia coli
GCA_000818995.1ContigJWZI00000000SAMN03177642
CVM N34152PS
Escherichia coli
GCA_000819015.1ContigJWZJ00000000SAMN03177638
CVM N33978PS
Escherichia coli
GCA_000818985.1ContigJWZK00000000SAMN03177636
CVM N33857PS
Escherichia coli
GCA_000831335.1ContigJXUL00000000SAMN03177641
CVM N34086PS
Escherichia coli
SRA Data Details
ParameterValue
Data volume, Gbases31
Data volume, Mbytes20128

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