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Links from Protein

Accession: PRJNA273161 ID: 273161

groundwater metagenome

Reconstruction of 8 complete and 793 draft genomes from a Candidate Phyla Radiation (CPR)

Little is known about a radiation of phyla that may comprise >15% of the bacterial domain. More...
AccessionPRJNA273161
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismgroundwater metagenome[Taxonomy ID: 717931]
unclassified sequences; metagenomes; ecological metagenomes; groundwater metagenome
Publications
  • Castelle CJ et al., "Unusual respiratory capacity and nitrogen metabolism in a Parcubacterium (OD1) of the Candidate Phyla Radiation.", Sci Rep, 2017 Jan 9;7:40101
  • Brown CT et al., "Unusual biology across a group comprising more than 15% of domain Bacteria.", Nature, 2015 Jul 9;523(7559):208-11
SubmissionRegistration date: 7-May-2015
Banfield Lab, University of California, Berkeley
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)30247
WGS master789
Genomic DNA407
Protein Sequences633116
Publications
PubMed2
PMC1
Other datasets
BioSample804
PopSet1
Assembly797
Assembly details:
Assembly levelNumber of Assemblies
8
648
141
797
AssemblyLevelWGSChrsBioSampleIsolateTaxonomy
GCA_000991925.1ScaffoldLBSM00000000
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GCA_000993135.1ScaffoldLBVO00000000
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GCA_001002835.1ScaffoldLCMV00000000
SAMN03319891
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GCA_000992805.1ScaffoldLBUX00000000
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GCA_001029735.1Complete genomeSAMN03319457
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GCA_001004665.1ScaffoldLCRO00000000
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GCA_001004725.1ScaffoldLCRP00000000
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GCA_001004755.1ContigLCRR00000000
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GCA_001004205.1ScaffoldLCQQ00000000
SAMN03319993
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GCA_000998545.1ScaffoldLCIP00000000
SAMN03319781
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GCA_001002655.1ScaffoldLCMN00000000
SAMN03319883
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GCA_001001005.1ScaffoldLCNV00000000
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GCA_001002405.1ScaffoldLCOA00000000
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GCA_001003675.1ScaffoldLCPP00000000
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GCA_000997915.1ScaffoldLCCN00000000
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GCA_001003155.1ScaffoldLCNM00000000
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GCA_001001455.1ScaffoldLCNO00000000
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GCA_001000075.1ScaffoldLCOO00000000
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GCA_001002325.1ContigLCNZ00000000
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GCA_000999805.1ContigLCOH00000000
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GCA_001003585.1ContigLCPK00000000
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GCA_001002525.1ScaffoldLCMH00000000
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GCA_001001375.1ScaffoldLCNU00000000
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GCA_001003465.1ScaffoldLCPE00000000
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GCA_001003245.1ScaffoldLCOT00000000
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GCA_000998395.1ScaffoldLCDE00000000
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GCA_000997715.1ScaffoldLCJQ00000000
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GCA_000993265.1ScaffoldLBVT00000000
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GCA_000996285.1ScaffoldLCEH00000000
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GCA_000994805.1ScaffoldLCEQ00000000
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GCA_001002125.1ScaffoldLCLO00000000
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GCA_000996375.1ContigLCEN00000000
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GCA_001002515.1ContigLCMJ00000000
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GCA_001002685.1ScaffoldLCMO00000000
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GCA_001002245.1ScaffoldLCLU00000000
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GCA_000999665.1ScaffoldLCGJ00000000
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GCA_001001895.1ScaffoldLCLF00000000
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GCA_000999325.1ContigLCFX00000000
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GCA_001002715.1ScaffoldLCMR00000000
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GCA_000995795.1ScaffoldLCEV00000000
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GCA_001002725.1ScaffoldLCMQ00000000
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GCA_000996315.1ContigLCAF00000000
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GCA_000998505.1ContigLCDI00000000
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GCA_001002645.1ScaffoldLCMM00000000
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GCA_001002615.1ScaffoldLCML00000000
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GCA_000995585.1ScaffoldLCEW00000000
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GCA_001001885.1ScaffoldLCOF00000000
SAMN03319928
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GCA_001001955.1ContigLCNT00000000
SAMN03319916
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GCA_001029675.1Complete genomeSAMN03319974
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GCA_001003335.1ScaffoldLCOZ00000000
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GCA_001003755.1ScaffoldLCPT00000000
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GCA_000990745.1ContigLBQK00000000
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GCA_000990755.1ScaffoldLBQJ00000000
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GCA_000990865.1ContigLBQN00000000
SAMN03319308
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GCA_000990765.1ContigLBQI00000000
SAMN03319303
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GCA_001029775.1Complete genomeSAMN03319287
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GCA_000997565.1ScaffoldLCEF00000000
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GCA_001000475.1ScaffoldLCHN00000000
SAMN03319752
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GCA_001001635.1ContigLCKV00000000
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GCA_000997955.1ScaffoldLCCO00000000
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GCA_001000965.1ScaffoldLCIH00000000
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GCA_001001485.1ScaffoldLCKO00000000
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GCA_001001475.1ScaffoldLCKM00000000
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GCA_000998715.1ScaffoldLCIU00000000
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GCA_001002445.1ScaffoldLCMC00000000
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GCA_000995475.1ScaffoldLCEA00000000
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GCA_001000745.1ScaffoldLCHZ00000000
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GCA_000995995.1ScaffoldLBYI00000000
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GCA_000994745.1ScaffoldLBZD00000000
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GCA_000993855.1ScaffoldLBZV00000000
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GCA_000996345.2ScaffoldLCAG00000000
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GCA_000994225.1ScaffoldLBYX00000000
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GCA_000996905.1ScaffoldLCBC00000000
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GCA_000994045.1ContigLBYT00000000
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GCA_000999815.1ScaffoldLCIZ00000000
SAMN03319791
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GCA_000993165.1ScaffoldLBVP00000000
SAMN03319441
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GCA_000996865.1ScaffoldLCAZ00000000
SAMN03319582
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GCA_000994385.1ContigLBZR00000000
SAMN03319548
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GCA_000991895.1ScaffoldLBSJ00000000
SAMN03319357
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GCA_000992925.1ScaffoldLBVE00000000
SAMN03319430
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GCA_000997385.1ContigLCBT00000000
SAMN03319602
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GCA_000995645.1ScaffoldLCEB00000000
SAMN03319662
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GCA_000992535.1ScaffoldLBUJ00000000
SAMN03319409
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GCA_000992645.1ScaffoldLBUP00000000
SAMN03319415
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GCA_000995045.1ScaffoldLBWV00000000
SAMN03319474
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GCA_000994545.1ScaffoldLCAB00000000
SAMN03319558
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GCA_000997105.1ScaffoldLCEJ00000000
SAMN03319670
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GCA_000991695.1ScaffoldLBSA00000000
SAMN03319348
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GCA_000995285.1ScaffoldLBXE00000000
SAMN03319483
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GCA_000996555.1ContigLCAQ00000000
SAMN03319573
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GCA_000997225.1ScaffoldLCBN00000000
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GCA_000995905.1ScaffoldLBYB00000000
SAMN03319506
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GCA_000992885.1ScaffoldLBVC00000000
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GCA_000993005.1ScaffoldLBVH00000000
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GCA_000994905.1ScaffoldLBWS00000000
SAMN03319471
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GCA_000996575.1ScaffoldLCAP00000000
SAMN03319572
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GCA_000992575.2ScaffoldLBUM00000000
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GCA_000992765.1ScaffoldLBUW00000000
SAMN03319422
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GCA_000992745.1ScaffoldLBUU00000000
SAMN03319420
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GCA_000992665.1ScaffoldLBUQ00000000
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GCA_000992615.1ScaffoldLBUN00000000
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GCA_000992375.1ScaffoldLBUC00000000
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GCA_000995525.1ScaffoldLBXO00000000
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GCA_000999715.1ScaffoldLCGL00000000
SAMN03319724
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GCA_000999145.1ContigLCFR00000000
SAMN03319704
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GCA_000998125.1ScaffoldLCIR00000000
SAMN03319783
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GCA_000994865.1ScaffoldLCIV00000000
SAMN03319787
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GCA_001000645.1ContigLCHU00000000
SAMN03319759
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GCA_000998625.1ScaffoldLCIT00000000
SAMN03319785
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GCA_001001585.1ScaffoldLCKT00000000
SAMN03319837
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GCA_001004655.1ScaffoldLCRM00000000
SAMN03320015
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GCA_000999085.1ScaffoldLCFO00000000
SAMN03319701
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GCA_001001105.1ContigLCIN00000000
SAMN03319779
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GCA_001002025.1ScaffoldLCLL00000000
SAMN03319855
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GCA_001002485.1ContigLCME00000000
SAMN03319874
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GCA_000999225.1ScaffoldLCOK00000000
SAMN03319933
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GCA_001000005.1ScaffoldLCGV00000000
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GCA_000994555.1ScaffoldLCJM00000000
SAMN03319804
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GCA_000998195.1ScaffoldLCJT00000000
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GCA_000998435.1ScaffoldLCDF00000000
SAMN03319640
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GCA_000990205.1ScaffoldLBPN00000000
SAMN03319281
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GCA_000998605.1ScaffoldLCDL00000000
SAMN03319646
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GCA_000995105.1ScaffoldLCFB00000000
SAMN03319688
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GCA_000999165.1ScaffoldLCIQ00000000
SAMN03319782
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GCA_001000895.1ScaffoldLCOQ00000000
SAMN03319939
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GCA_001003565.1ScaffoldLCPJ00000000
SAMN03319958
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GCA_000996425.1ContigLCAJ00000000
SAMN03319566
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GCA_000998235.1ScaffoldLCCY00000000
SAMN03319633
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GCA_000998355.1ScaffoldLCDD00000000
SAMN03319638
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GCA_000999095.1ScaffoldLCFP00000000
SAMN03319702
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GCA_001000775.1ScaffoldLCIB00000000
SAMN03319766
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GCA_001003345.1ScaffoldLCOY00000000
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GCA_000998825.1ContigLCFD00000000
SAMN03319690
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GCA_001000435.1ScaffoldLCHM00000000
SAMN03319751
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GCA_001003965.1ScaffoldLCQD00000000
SAMN03319979
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GCA_000995415.1ScaffoldLCEX00000000
SAMN03319684
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GCA_000993925.1ScaffoldLCEO00000000
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GCA_001003475.1ScaffoldLCPF00000000
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GCA_001003525.1ContigLCPI00000000
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GCA_001001265.1ScaffoldLCKF00000000
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GCA_001002015.1ScaffoldLCLJ00000000
SAMN03319853
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GCA_001004035.1ContigLCQG00000000
SAMN03319982
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GCA_001004105.1ContigLCQK00000000
SAMN03319986
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GCA_001003655.1ScaffoldLCPO00000000
SAMN03319963
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GCA_000997665.1ScaffoldLCCD00000000
SAMN03319612
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GCA_001004185.1ScaffoldLCQO00000000
SAMN03319991
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GCA_001003845.1ScaffoldLCPZ00000000
SAMN03319975
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GCA_001003925.1ScaffoldLCQB00000000
SAMN03319977
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GCA_001004345.1ScaffoldLCQW00000000
SAMN03319999
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GCA_001004985.1ScaffoldLCSD00000000
SAMN03320032
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GCA_001004125.1ContigLCQM00000000
SAMN03319989
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GCA_001004425.1ScaffoldLCRA00000000
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GCA_001003805.1ScaffoldLCPV00000000
SAMN03319970
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GCA_001004525.1ScaffoldLCRF00000000
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GCA_000998185.1ScaffoldLCCW00000000
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GCA_000990055.1ScaffoldLBSY00000000
SAMN03319372
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GCA_000995025.1ScaffoldLBWU00000000
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GCA_000991365.1ScaffoldLBRJ00000000
SAMN03319331
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GCA_000989745.1ScaffoldLBTD00000000
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GCA_000994125.1ScaffoldLBZT00000000
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GCA_000996635.1ScaffoldLCAR00000000
SAMN03319574
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GCA_000990905.1ScaffoldLBQP00000000
SAMN03319310
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GCA_000991465.1ContigLBRO00000000
SAMN03319336
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GCA_000992095.1ScaffoldLBTO00000000
SAMN03319388
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GCA_000995305.1ScaffoldLBXG00000000
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SAMN03319581
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GCA_000996225.1ContigLBYL00000000
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GCA_000989785.1ScaffoldLBTK00000000
SAMN03319384
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GCA_000994635.1ScaffoldLBZN00000000
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GCA_000992085.1ScaffoldLBTN00000000
SAMN03319387
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GCA_000995575.1ScaffoldLBXR00000000
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