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Links from Protein

Accession: PRJNA278302 ID: 278302

terrestrial metagenome

Alaska oil reservoir Metagenome

Hydrocarbon reservoirs are major sites of methane production and carbon turnover, processes with significant impacts on energy resources and global biogeochemical cycles. More...
AccessionPRJNA278302
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismterrestrial metagenome[Taxonomy ID: 1348798]
unclassified sequences; metagenomes; ecological metagenomes; terrestrial metagenome
PublicationsHu P et al., "Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs.", mBio, 2016 Jan 19;7(1):e01669-15
SubmissionRegistration date: 8-Jan-2016
Lawrence Berkeley National Lab
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)13145
WGS master80
SRA Experiments6
Protein Sequences120680
Publications
PubMed1
PMC1
Other datasets
BioSample80
Assembly80
Assembly details:
Assembly levelNumber of Assemblies
13
67
80
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_001508155.1ContigLGFI00000000SAMN03445135
64_32
GCA_001508275.1ScaffoldLGFV00000000SAMN03445149
66_15
GCA_001508255.1ContigLGFU00000000SAMN03445148
46_16
GCA_001508595.1ContigLGHA00000000SAMN03445181
46_22
GCA_001508475.1ContigLGGK00000000SAMN03445164
49_20
GCA_001508815.1ContigLGEX00000000SAMN03445123
49_2300
GCA_001508745.1ContigLGEQ00000000SAMN03445115
49_95
GCA_001509285.1ContigLGGA00000000SAMN03445154
34_128
GCA_001508655.1ContigLGHD00000000SAMN03445184
34_868
GCA_001509275.1ContigLGGC00000000SAMN03445156
38_7
GCA_001508895.1ContigLGFN00000000SAMN03445140
34_81
GCA_001507995.1ContigLGEY00000000SAMN03445124
38_43
GCA_001508005.1ContigLGEZ00000000SAMN03445125
41_269
GCA_001508235.1ContigLGFR00000000SAMN03445144
62_21
GCA_001509345.1ContigLGGM00000000SAMN03445166
38_11
GCA_001509075.1ContigLGGU00000000SAMN03445175
45_62
GCA_001507915.1ContigLGER00000000SAMN03445116
38_4375
GCA_001508375.1ContigLGFZ00000000SAMN03445153
46_296
GCA_001508995.1ContigLGGF00000000SAMN03445159
46_80
GCA_001507975.1ContigLGEW00000000SAMN03445121
55_53
GCA_001507855.1ContigLGEN00000000SAMN03445111
54_146
GCA_001509335.1ScaffoldLGGY00000000SAMN03445179
46_43
GCA_001508355.1ContigLGFY00000000SAMN03445152
46_47
GCA_001508435.1ContigLGGH00000000SAMN03445161
46_47
GCA_001509115.1ScaffoldLGGW00000000SAMN03445177
46_70
GCA_001508515.1ContigLGGP00000000SAMN03445169
46_7
GCA_001507955.1ContigLGEU00000000SAMN03445119
41_258
GCA_001509005.1ContigLGGL00000000SAMN03445165
42_16
GCA_001508455.1ContigLGGJ00000000SAMN03445163
52_23
GCA_001508665.1ScaffoldLGHE00000000SAMN03445185
63_41
GCA_001509255.1ContigLGGD00000000SAMN03445157
62_101
GCA_001508695.1ScaffoldLGHF00000000SAMN03445186
53_19
GCA_001508185.1ContigLGFK00000000SAMN03445137
56_1174
GCA_001508615.1ContigLGHB00000000SAMN03445182
56_747
GCA_001509375.1ScaffoldLGFT00000000SAMN03445147
57_489
GCA_001509055.1ContigLGGT00000000SAMN03445173
39_6
GCA_001508535.1ContigLGGQ00000000SAMN03445170
39_7
GCA_001508035.1ContigLGFA00000000SAMN03445126
60_41
GCA_001508635.1ContigLGHC00000000SAMN03445183
32_520
GCA_001508305.1ContigLGFW00000000SAMN03445150
33_209
GCA_001508405.1ContigLGGG00000000SAMN03445160
34_609
GCA_001508555.1ScaffoldLGGS00000000SAMN03445172
49_5
GCA_001508055.1ContigLGFC00000000SAMN03445128
34_12
GCA_001509385.1ContigLGGR00000000SAMN03445171
34_7
GCA_001508485.1ContigLGGN00000000SAMN03445167
50_10
GCA_001509175.1ScaffoldLGHH00000000SAMN03445188
51_7
GCA_001507875.1ContigLGEP00000000SAMN03445113
63_8
GCA_001508115.1ContigLGFF00000000SAMN03445131
39_14
GCA_001508395.1ContigLGGB00000000SAMN03445155
53_16
GCA_001508935.1ContigLGFQ00000000SAMN03445143
54_24
GCA_001509155.1ScaffoldLGHG00000000SAMN03445187
54_9
GCA_001508975.1ContigLGGE00000000SAMN03445158
57_84
GCA_001509095.1ScaffoldLGGV00000000SAMN03445176
58_81
GCA_001508215.1ContigLGFO00000000SAMN03445141
55_64
GCA_001508735.1ContigLGEO00000000SAMN03445112
34_5835
GCA_001508855.1ContigLGFL00000000SAMN03445138
50_218
GCA_001507935.1ContigLGET00000000SAMN03445118
44_46
GCA_001508065.1ContigLGFD00000000SAMN03445129
41_94_
GCA_001508175.1ContigLGFJ00000000SAMN03445136
40_45
GCA_001508095.1ContigLGFE00000000SAMN03445130
37_1485
GCA_001508915.1ContigLGFP00000000SAMN03445142
37_35
GCA_001508775.1ContigLGES00000000SAMN03445117
37_54
GCA_001508715.1ContigLGHI00000000SAMN03445189
49_6
GCA_001508125.1ContigLGFG00000000SAMN03445132
46_26
GCA_001508875.1ContigLGFM00000000SAMN03445139
47_83
GCA_001508295.1ContigLGFH00000000SAMN03445133
50_1627
GCA_001508795.1ContigLGEV00000000SAMN03445120
50_64
GCA_001509135.1ScaffoldLGGZ00000000SAMN03445180
46_20
GCA_001508955.1ContigLGFS00000000SAMN03445145
47_9
GCA_001508835.1ContigLGFB00000000SAMN03445127
42_11
GCA_001508335.1ContigLGFX00000000SAMN03445151
32_111
GCA_001508575.1ContigLGGX00000000SAMN03445178
34_109
GCA_001509035.1ContigLGGO00000000SAMN03445168
34_10
GCA_001509265.1ContigLGGI00000000SAMN03445162
36_33
GCA_001507815.1ContigLDZS00000000SAMN03408295
-
GCA_001507835.1ScaffoldLDZU00000000SAMN03408293
-
GCA_001507825.1ScaffoldLDZT00000000SAMN03408292
-
GCA_001507715.1ContigLDZR00000000SAMN03408294
-
GCA_001507705.1ContigLDZQ00000000SAMN03408297
-
GCA_001507695.1ContigLDZP00000000SAMN03408296
-
SRA Data Details
ParameterValue
Data volume, Gbases86
Data volume, Mbytes53096

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