Enterococcus faecium (ID 765464) - BioProject

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Accession: PRJNA765464 ID: 765464

Enterococcus faecium

Vancomycin Resistant Enterococci Bacteremia in an Endemic Region: Clinical Features and Genomic Analysis, a 12-Year Cohort

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Vancomycin resistant Enterococcus faecium (VRE) is an important nosocomial pathogen with an increasing prevalence of its related infections worldwide. More...

Accession	PRJNA765464
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Enterococcus faecium[Taxonomy ID: 1352] Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecium
Publications	Abu-Lybdeh O et al., "Vancomycin-resistant enterococcus bacteraemia in an endemic region: clinical features and genomic analysis: a 12-year cohort.", J Hosp Infect, 2022 Mar;121:105-113
Submission	Registration date: 3-Mar-2022 Shaare Zedek Medical Center
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	175
SRA Experiments	175
Publications
PubMed	1
Other datasets
BioSample	175
Assembly	175

Assembly details:

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Assembly level

Number of Assemblies

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Total

175
175

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_022468695.1	JAIYZH000000000	SAMN21560231	HMC_B3389876	Enterococcus faecium
GCA_022468675.1	JAIYZG000000000	SAMN21560232	HMC_B3389914	Enterococcus faecium
GCA_022468625.1	JAIYZF000000000	SAMN21560233	HMC_B3391968	Enterococcus faecium
GCA_022468615.1	JAIYZE000000000	SAMN21560234	HMC_B3392566	Enterococcus faecium
GCA_022468595.1	JAIYZD000000000	SAMN21560235	HMC_B3395935	Enterococcus faecium
GCA_022468555.1	JAIYZC000000000	SAMN21560236	HMC_B3397316	Enterococcus faecium
GCA_022469055.1	JAIYZP000000000	SAMN21560223	HMC_B3323613	Enterococcus faecium
GCA_022469035.1	JAIYZO000000000	SAMN21560224	HMC_B3326277	Enterococcus faecium
GCA_022468955.1	JAIYZL000000000	SAMN21560227	HMC_B3380339	Enterococcus faecium
GCA_022468925.1	JAIYZN000000000	SAMN21560225	HMC_B3331227	Enterococcus faecium
GCA_022468915.1	JAIYZM000000000	SAMN21560226	HMC_B3333174	Enterococcus faecium
GCA_022468885.1	JAIYZJ000000000	SAMN21560229	HMC_B3381423	Enterococcus faecium
GCA_022468875.1	JAIYZI000000000	SAMN21560230	HMC_B3387847	Enterococcus faecium
GCA_022468815.1	JAIYZK000000000	SAMN21560228	HMC_B3381358	Enterococcus faecium
GCA_022469575.1	JAIZAM000000000	SAMN21560183	SZMC_A11	Enterococcus faecium
GCA_022469555.1	JAIZAN000000000	SAMN21560181	SZMC_9796	Enterococcus faecium
GCA_022469525.1	JAIZAK000000000	SAMN21560185	SZMC_A2616	Enterococcus faecium
GCA_022469515.1	JAIZAL000000000	SAMN21560184	SZMC_A2612	Enterococcus faecium
GCA_022469495.1	JAIZAJ000000000	SAMN21560186	SZMC_A3174	Enterococcus faecium
GCA_022469455.1	JAIZAH000000000	SAMN21560188	SZMC_A4422	Enterococcus faecium
GCA_022469465.1	JAIZAI000000000	SAMN21560187	SZMC_A3483	Enterococcus faecium
GCA_022469435.1	JAIZAE000000000	SAMN21560191	SZMC_A4785	Enterococcus faecium
GCA_022469415.1	JAIZAG000000000	SAMN21560189	SZMC_A4511	Enterococcus faecium
GCA_022469395.1	JAIZAF000000000	SAMN21560190	SZMC_A4672	Enterococcus faecium
GCA_022469375.1	JAIZAC000000000	SAMN21560193	SZMC_A534	Enterococcus faecium
GCA_022469355.1	JAIZAD000000000	SAMN21560192	SZMC_A4992	Enterococcus faecium
GCA_022469335.1	JAIZAB000000000	SAMN21560196	SZMC_A5546	Enterococcus faecium
GCA_022469315.1	JAIYXL000000000	SAMN21560199	SZMC_A6039	Enterococcus faecium
GCA_022469295.1	JAIZAA000000000	SAMN21560198	SZMC_A5743	Enterococcus faecium
GCA_022469265.1	JAIYZY000000000	SAMN21560201	SZMC_A625	Enterococcus faecium
GCA_022469255.1	JAIYZZ000000000	SAMN21560200	SZMC_A618	Enterococcus faecium
GCA_022469235.1	JAIYZX000000000	SAMN21560203	SZMC_A7004	Enterococcus faecium
GCA_022469195.1	JAIYZV000000000	SAMN21560205	SZMC_A7103	Enterococcus faecium
GCA_022469215.1	JAIYZW000000000	SAMN21560204	SZMC_A7057	Enterococcus faecium
GCA_022469165.1	JAIYZT000000000	SAMN21560209	SZMC_A7766	Enterococcus faecium
GCA_022469155.1	JAIYZU000000000	SAMN21560207	SZMC_A7344	Enterococcus faecium
GCA_022469135.1	JAIYZQ000000000	SAMN21560221	SZMC_A997	Enterococcus faecium
GCA_022469115.1	JAIYZR000000000	SAMN21560218	SZMC_A9719	Enterococcus faecium
GCA_022469095.1	JAIYZS000000000	SAMN21560210	SZMC_A8090	Enterococcus faecium
GCA_022467715.1	JAIYXV000000000	SAMN21560271	HMC_B3510323	Enterococcus faecium
GCA_022467695.1	JAIYXU000000000	SAMN21560272	HMC_B3512765	Enterococcus faecium
GCA_022467795.1	JAIYXY000000000	SAMN21560268	HMC_B3506566	Enterococcus faecium
GCA_022467755.1	JAIYXX000000000	SAMN21560269	HMC_B3507388	Enterococcus faecium
GCA_022467765.1	JAIYXW000000000	SAMN21560270	HMC_B3510170	Enterococcus faecium
GCA_022467895.1	JAIYYC000000000	SAMN21560264	HMC_B3504279	Enterococcus faecium
GCA_022467875.1	JAIYYB000000000	SAMN21560265	HMC_B3505096	Enterococcus faecium
GCA_022467855.1	JAIYXZ000000000	SAMN21560267	HMC_B3506128	Enterococcus faecium
GCA_022467835.1	JAIYYA000000000	SAMN21560266	HMC_B3505791	Enterococcus faecium
GCA_022467995.1	JAIYYG000000000	SAMN21560259	HMC_B3493726	Enterococcus faecium
GCA_022467945.1	JAIYYD000000000	SAMN21560263	HMC_B3499186	Enterococcus faecium
GCA_022467935.1	JAIYYE000000000	SAMN21560261	HMC_B3497751	Enterococcus faecium
GCA_022468055.1	JAIYYI000000000	SAMN21560257	HMC_B3492207	Enterococcus faecium
GCA_022468035.1	JAIYYH000000000	SAMN21560258	HMC_B3493321	Enterococcus faecium
GCA_022468015.1	JAIYYF000000000	SAMN21560260	HMC_B3494188	Enterococcus faecium
GCA_022468175.1	JAIYYO000000000	SAMN21560251	HMC_B3482861	Enterococcus faecium
GCA_022468155.1	JAIYYM000000000	SAMN21560253	HMC_B3486430	Enterococcus faecium
GCA_022468135.1	JAIYYL000000000	SAMN21560254	HMC_B3487531	Enterococcus faecium
GCA_022468105.1	JAIYYJ000000000	SAMN21560256	HMC_B3489810	Enterococcus faecium
GCA_022468095.1	JAIYYK000000000	SAMN21560255	HMC_B3487590	Enterococcus faecium
GCA_022468265.1	JAIYYS000000000	SAMN21560247	HMC_B3470392	Enterococcus faecium
GCA_022468255.1	JAIYYP000000000	SAMN21560250	HMC_B3480348	Enterococcus faecium
GCA_022468215.1	JAIYYQ000000000	SAMN21560249	HMC_B3478620	Enterococcus faecium
GCA_022468225.1	JAIYYN000000000	SAMN21560252	HMC_B3485144	Enterococcus faecium
GCA_022468375.1	JAIYYT000000000	SAMN21560245	HMC_B3460390	Enterococcus faecium
GCA_022468335.1	JAIYYU000000000	SAMN21560244	HMC_B3457694	Enterococcus faecium
GCA_022468315.1	JAIYYR000000000	SAMN21560248	HMC_B3477656	Enterococcus faecium
GCA_022468435.1	JAIYYX000000000	SAMN21560241	HMC_B3454210	Enterococcus faecium
GCA_022468415.1	JAIYYV000000000	SAMN21560243	HMC_B3455913	Enterococcus faecium
GCA_022468385.1	JAIYYW000000000	SAMN21560242	HMC_B3454349	Enterococcus faecium
GCA_022468535.1	JAIYYY000000000	SAMN21560240	HMC_B3406899	Enterococcus faecium
GCA_022468505.1	JAIYYZ000000000	SAMN21560239	HMC_B3404955	Enterococcus faecium
GCA_022468495.1	JAIYZB000000000	SAMN21560237	HMC_B3398336	Enterococcus faecium
GCA_022468475.1	JAIYZA000000000	SAMN21560238	HMC_B3400012	Enterococcus faecium
GCA_022464975.1	JAIYXR000000000	SAMN21560179	SZMC_7526	Enterococcus faecium
GCA_022464955.1	JAIYXO000000000	SAMN21560194	SZMC_A5476	Enterococcus faecium
GCA_022464935.1	JAIYXP000000000	SAMN21560182	SZMC_9926	Enterococcus faecium
GCA_022464905.1	JAIYXJ000000000	SAMN21560206	SZMC_A7229	Enterococcus faecium
GCA_022464895.1	JAIYXM000000000	SAMN21560197	SZMC_A5625	Enterococcus faecium
GCA_022464875.1	JAIYXN000000000	SAMN21560195	SZMC_A5526	Enterococcus faecium
GCA_022464835.1	JAIYXI000000000	SAMN21560208	SZMC_A7698	Enterococcus faecium
GCA_022464845.1	JAIYXK000000000	SAMN21560202	SZMC_A6925	Enterococcus faecium
GCA_022464815.1	JAIYXH000000000	SAMN21560211	SZMC_A8364	Enterococcus faecium
GCA_022464785.1	JAIYXE000000000	SAMN21560214	SZMC_A8454	Enterococcus faecium
GCA_022464775.1	JAIYXF000000000	SAMN21560213	SZMC_A8412	Enterococcus faecium
GCA_022464755.1	JAIYXG000000000	SAMN21560212	SZMC_A8391	Enterococcus faecium
GCA_022464735.1	JAIYXD000000000	SAMN21560215	SZMC_A910	Enterococcus faecium
GCA_022464715.1	JAIYXC000000000	SAMN21560216	SZMC_A9192	Enterococcus faecium
GCA_022464695.1	JAIYWZ000000000	SAMN21560220	SZMC_A9901	Enterococcus faecium
GCA_022464675.1	JAIYXB000000000	SAMN21560217	SZMC_A9421	Enterococcus faecium
GCA_022464655.1	JAIYXA000000000	SAMN21560219	SZMC_A9762	Enterococcus faecium
GCA_022464635.1	JAIYWY000000000	SAMN21560222	SZMC_B0041	Enterococcus faecium
GCA_022464595.1	JAIYXT000000000	SAMN21560273	HMC_B3514290	Enterococcus faecium
GCA_022464585.1	JAIYWX000000000	SAMN21560246	HMC_B3467184	Enterococcus faecium
GCA_022464575.1	JAIYWW000000000	SAMN21560262	HMC_B3498739	Enterococcus faecium
GCA_022464555.1	JAIYXS000000000	SAMN21560274	HMC_B3515675	Enterococcus faecium
GCA_022464535.1	JAIYWV000000000	SAMN21560275	HMC_B3516271	Enterococcus faecium
GCA_022464515.1	JAIYWU000000000	SAMN21560276	HMC_B3524566	Enterococcus faecium
GCA_022464485.1	JAIYWS000000000	SAMN21560278	HMC_B3526913	Enterococcus faecium
GCA_022464475.1	JAIYWT000000000	SAMN21560277	HMC_B3525114	Enterococcus faecium
GCA_022464455.1	JAIYWR000000000	SAMN21560279	HMC_B3527642	Enterococcus faecium
GCA_022464435.1	JAIYWP000000000	SAMN21560281	HMC_B3550590	Enterococcus faecium
GCA_022464415.1	JAIYWQ000000000	SAMN21560280	HMC_B3529468	Enterococcus faecium
GCA_022464385.1	JAIYWO000000000	SAMN21560282	HMC_B3553481	Enterococcus faecium
GCA_022464375.1	JAIYWN000000000	SAMN21560283	HMC_B3558907	Enterococcus faecium
GCA_022464355.1	JAIYWL000000000	SAMN21560285	HMC_B3562677	Enterococcus faecium
GCA_022464325.1	JAIYWM000000000	SAMN21560284	HMC_B3559872	Enterococcus faecium
GCA_022464315.1	JAIYWK000000000	SAMN21560286	HMC_B3566415	Enterococcus faecium
GCA_022464295.1	JAIYWJ000000000	SAMN21560287	HMC_B3567780	Enterococcus faecium
GCA_022464275.1	JAIYWI000000000	SAMN21560288	HMC_B3574116	Enterococcus faecium
GCA_022464215.1	JAIYWF000000000	SAMN21560291	HMC_B3574875	Enterococcus faecium
GCA_022464235.1	JAIYWG000000000	SAMN21560290	HMC_B3574327	Enterococcus faecium
GCA_022464225.1	JAIYWH000000000	SAMN21560289	HMC_B3574117	Enterococcus faecium
GCA_022464195.1	JAIYWE000000000	SAMN21560292	HMC_B3575809	Enterococcus faecium
GCA_022464175.1	JAIYWD000000000	SAMN21560293	HMC_B3576433	Enterococcus faecium
GCA_022464155.1	JAIYWC000000000	SAMN21560294	HMC_B3577945	Enterococcus faecium
GCA_022464135.1	JAIYWA000000000	SAMN21560296	HMC_B3581289	Enterococcus faecium
GCA_022464115.1	JAIYVZ000000000	SAMN21560297	HMC_B3581865	Enterococcus faecium
GCA_022464075.1	JAIYWB000000000	SAMN21560295	HMC_B3581256	Enterococcus faecium
GCA_022463995.1	JAIYVX000000000	SAMN21560299	HMC_B3587935	Enterococcus faecium
GCA_022464005.1	JAIYVY000000000	SAMN21560298	HMC_B3584930	Enterococcus faecium
GCA_022463975.1	JAIYVW000000000	SAMN21560300	HMC_B3590083	Enterococcus faecium
GCA_022463935.1	JAIYVV000000000	SAMN21560301	HMC_B3591460	Enterococcus faecium
GCA_022463945.1	JAIYVU000000000	SAMN21560302	HMC_B3597541	Enterococcus faecium
GCA_022463915.1	JAIYVT000000000	SAMN21560303	HMC_B3604787	Enterococcus faecium
GCA_022463895.1	JAIYVS000000000	SAMN21560304	HMC_B3609826	Enterococcus faecium
GCA_022463875.1	JAIYVR000000000	SAMN21560305	HMC_B7136370	Enterococcus faecium
GCA_022463855.1	JAIYVQ000000000	SAMN21560306	HMC_B7136439	Enterococcus faecium
GCA_022463835.1	JAIYVP000000000	SAMN21560307	HMC_B7137102	Enterococcus faecium
GCA_022463815.1	JAIYVO000000000	SAMN21560308	HMC_B7140523	Enterococcus faecium
GCA_022463795.1	JAIYVM000000000	SAMN21560310	HMC_B7146071	Enterococcus faecium
GCA_022463775.1	JAIYVN000000000	SAMN21560309	HMC_B7144895	Enterococcus faecium
GCA_022463755.1	JAIYVK000000000	SAMN21560312	HMC_B7162150	Enterococcus faecium
GCA_022463735.1	JAIYVL000000000	SAMN21560311	HMC_B7162133	Enterococcus faecium
GCA_022463715.1	JAIYVJ000000000	SAMN21560313	HMC_B7163274	Enterococcus faecium
GCA_022463685.1	JAIYVI000000000	SAMN21560314	HMC_B7164092	Enterococcus faecium
GCA_022463675.1	JAIYVH000000000	SAMN21560315	HMC_B7174827	Enterococcus faecium
GCA_022463645.1	JAIYVG000000000	SAMN21560316	SZMC_C0411	Enterococcus faecium
GCA_022463635.1	JAIYVF000000000	SAMN21560317	SZMC_C0429	Enterococcus faecium
GCA_022463615.1	JAIYVE000000000	SAMN21560318	SZMC_C1127	Enterococcus faecium
GCA_022463595.1	JAIYVD000000000	SAMN21560319	SZMC_C1135	Enterococcus faecium
GCA_022463575.1	JAIYUZ000000000	SAMN21560323	SZMC_C1577	Enterococcus faecium
GCA_022463535.1	JAIYVB000000000	SAMN21560321	SZMC_C1236	Enterococcus faecium
GCA_022463515.1	JAIYVC000000000	SAMN21560320	SZMC_C1221	Enterococcus faecium
GCA_022463525.1	JAIYVA000000000	SAMN21560322	SZMC_C1261	Enterococcus faecium
GCA_022463495.1	JAIYUY000000000	SAMN21560324	SZMC_C1605	Enterococcus faecium
GCA_022463475.1	JAIYUX000000000	SAMN21560325	SZMC_C2060	Enterococcus faecium
GCA_022463435.1	JAIYUW000000000	SAMN21560326	SZMC_C2362	Enterococcus faecium
GCA_022463425.1	JAIYUU000000000	SAMN21560328	SZMC_C2501	Enterococcus faecium
GCA_022463415.1	JAIYUV000000000	SAMN21560327	SZMC_C2436	Enterococcus faecium
GCA_022463395.1	JAIYUT000000000	SAMN21560329	SZMC_C2808	Enterococcus faecium
GCA_022463375.1	JAIYUS000000000	SAMN21560330	SZMC_C2858	Enterococcus faecium
GCA_022463355.1	JAIYUP000000000	SAMN21560333	SZMC_C3402	Enterococcus faecium
GCA_022463335.1	JAIYUR000000000	SAMN21560331	SZMC_C2882	Enterococcus faecium
GCA_022463315.1	JAIYUO000000000	SAMN21560334	SZMC_C3417	Enterococcus faecium
GCA_022463295.1	JAIYUQ000000000	SAMN21560332	SZMC_C3081	Enterococcus faecium
GCA_022463275.1	JAIYUN000000000	SAMN21560335	SZMC_C3443	Enterococcus faecium
GCA_022463255.1	JAIYUM000000000	SAMN21560336	SZMC_C3457	Enterococcus faecium
GCA_022463235.1	JAIYUL000000000	SAMN21560337	SZMC_C3498	Enterococcus faecium
GCA_022463205.1	JAIYUI000000000	SAMN21560340	SZMC_C3546	Enterococcus faecium
GCA_022463195.1	JAIYUK000000000	SAMN21560338	SZMC_C3509	Enterococcus faecium
GCA_022463175.1	JAIYUJ000000000	SAMN21560339	SZMC_C3525	Enterococcus faecium
GCA_022463155.1	JAIYUG000000000	SAMN21560342	SZMC_C3605	Enterococcus faecium
GCA_022463095.1	JAIYUF000000000	SAMN21560343	SZMC_C3608	Enterococcus faecium
GCA_022463135.1	JAIYUH000000000	SAMN21560341	SZMC_C3550	Enterococcus faecium
GCA_022463075.1	JAIYUD000000000	SAMN21560345	SZMC_C3762	Enterococcus faecium
GCA_022463085.1	JAIYUE000000000	SAMN21560344	SZMC_C3629	Enterococcus faecium
GCA_022463045.1	JAIYUC000000000	SAMN21560346	SZMC_C3763	Enterococcus faecium
GCA_022463035.1	JAIYUB000000000	SAMN21560347	SZMC_C3818	Enterococcus faecium
GCA_022463005.1	JAIYUA000000000	SAMN21560348	SZMC_C3834	Enterococcus faecium
GCA_022462995.1	JAIYTZ000000000	SAMN21560349	SZMC_C3925	Enterococcus faecium
GCA_022462955.1	JAIYTX000000000	SAMN21560351	SZMC_C4017	Enterococcus faecium
GCA_022462975.1	JAIYTY000000000	SAMN21560350	SZMC_C3948	Enterococcus faecium
GCA_022462935.1	JAIYTW000000000	SAMN21560352	SZMC_C4200	Enterococcus faecium
GCA_022462905.1	JAIYTV000000000	SAMN21560353	SZMC_C4260	Enterococcus faecium
GCA_022465015.1	JAIYXQ000000000	SAMN21560180	SZMC_9521	Enterococcus faecium

SRA Data Details

Parameter	Value
Data volume, Gbases	33
Data volume, Mbytes	14378

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Enterococcus faecium

Vancomycin Resistant Enterococci Bacteremia in an Endemic Region: Clinical Features and Genomic Analysis, a 12-Year Cohort

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