This project seeks to develop sequence subtraction databases to enhance the capability of viral detection, discovery and characterization in priority cell lines and organisms.
More...This project seeks to develop sequence subtraction databases to enhance the capability of viral detection, discovery and characterization in priority cell lines and organisms. Established sequence subtraction databases will enhance our ability to identify novel viruses that impact humans and agriculture. Our work has prioritized sequence subtraction databases for seven cell lines/organisms as follows: 1) Aedes albopictus C6/36 cells, 2) Jurkat human T-cells, 3) Huh7 cells, 4) HepG2 cells, 5) Xenopsylla cheopis 6) Ixodes scapularis ISE6 cells and 7) sugarcane cultivar Saccharum spp. CP96-1252 . Subtraction databases of these organisms will enhance the capability to discover, detect and characterize viruses that impact humans and agriculture.
Less...| Accession | PRJNA345486 |
| Data Type | Genome sequencing and assembly |
| Scope | Multispecies |
| Publications | Miller JR et al., "A draft genome sequence for the Ixodes scapularis cell line, ISE6.", F1000Res, 2018;7:297 |
| Grants | - "Development and Validation of Sequence Subtraction Databases to Improve Virus Discovery through Next Generation Sequencing" (Grant ID HSHQDC-15-C-B0059, Department of Homeland Security)
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| Submission | Registration date: 5-Oct-2016
J. Craig Venter Institute |
| Relevance | Medical and Agricultural |
| Locus Tag Prefix | BKM62 |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (WGS master) | 2 |
| SRA Experiments | 296 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 55 |
| Assembly | 2 |
Related Project Category: RefseqGenbank
PRJNA357111 : Genome sequencing and assembly to aid in virus detection