Human gut MAG #79 derived from sample SRS475979

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Result Filters

Organism: Methanomassiliicoccales archaeon
cellular organisms; Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata; Methanomassiliicoccales; unclassified Methanomassiliicoccales

Attributes

collection date	2018-01-01
broad-scale environmental context	human gut
local-scale environmental context	human-associated habitat
environmental medium	faeces
geographic location	Fiji
investigation type	metagenome-assembled genome
isolation source	human stool
project name	Global Human Gut MAGs
sample name	HGM01200
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2019-01-29T17:02:53Z
ENA-LAST-UPDATE	2019-01-28T22:49:20Z
External Id	SAMEA5279463
INSDC center name	DOE JGI
INSDC first public	2019-01-29T17:02:53Z
INSDC last update	2019-01-28T22:49:20Z
INSDC status	public
Submitter Id	HGM01200
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MegaHIT v1.1.1
binning parameters	default
binning software	MaxBin v2.2.4, MetaBAT v2.12.1, CONCOCT v0.4.0, DAS Tool v1.1.0
completeness score	89.5
completeness software	CheckM v1.0.7
contamination score	0.04
geographic location (latitude)	-16.578193
geographic location (longitude)	179.414413
metagenomic source	408170
sample derived from	SRS883293
scientific_name	Methanomassiliicoccales archaeon
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

BioProject: PRJEB31003 Global Human Gut MAG (HGM) Dataset
Retrieve all samples from this project

Human gut MAG #79 derived from sample SRS475979
Human gut MAG #79 derived from sample SRS475979

biosample
dentin matrix acidic phosphoprotein 1, partial [Uropsilus nivatus]
dentin matrix acidic phosphoprotein 1, partial [Uropsilus nivatus]
gi|1104679586|gb|APD33335.1|

Protein
Scapanus townsendii isolate Scatow_2 dentin matrix acidic phosphoprotein 1 (DMP1...
Scapanus townsendii isolate Scatow_2 dentin matrix acidic phosphoprotein 1 (DMP1) gene, partial cds
gi|1104679561|gb|KX754918.1|

Nucleotide
TPA: Mycoplasma pneumoniae FH tmRNA gene Mycop_pneum_FH
TPA: Mycoplasma pneumoniae FH tmRNA gene Mycop_pneum_FH
gi|559132599|tpe|HG521020.1|

Nucleotide
Nanoarchaeota archaeon SCGC AAA011-L15, whole genome shotgun sequencing project
Nanoarchaeota archaeon SCGC AAA011-L15, whole genome shotgun sequencing project
gi|507672895|gb|AQRM00000000.1|AQRM 000

Nucleotide

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