Metagenome-Assembled Genome (MAG)

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Leuconostoc sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Leuconostoc; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	human-associated habitat
local-scale environmental context	human gut
environmental medium	faeces
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human gut
project name	Human gut MAGs
sample name	MAG-GUT61468
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2019-05-29T04:04:06Z
ENA-LAST-UPDATE	2019-03-18T18:28:54Z
External Id	SAMEA5488495
INSDC center name	EBI
INSDC first public	2019-05-29T04:04:06Z
INSDC last update	2019-03-18T18:28:54Z
INSDC status	public
Submitter Id	MAG-GUT61468
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.10.0
binning parameters	default
binning software	MetaBAT v2.12.1
common name	uncultured Leuconostoc sp.
completeness score	89.37
completeness software	CheckM v1.0.7
contamination score	2.66
geographic location (latitude)	37.0902
geographic location (longitude)	-95.7129
metagenomic source	human gut metagenome
sample derived from	SAMN05971610
scientific_name	uncultured Leuconostoc sp.
sequencing method	Illumina
taxonomic identity marker	multi-marker approach