MAG of reducing HRT to shape the chain elongation ... - BioSample

MAG of reducing HRT to shape the chain elongation reactor microbiota

Organism: uncultured Erysipelotrichaceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples

Attributes

collection date	2018
broad-scale environmental context	bioreactor
local-scale environmental context	anaerobic
environmental medium	water
geographic location	Germany
investigation type	metagenome-assembled genome
isolation source	anaerobic bioreactor
project name	applied microbial ecology of anaerobic reactor microbiomes
relationship to oxygen	anaerobe
sample name	UMB00059
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-06T04:05:46Z
ENA-LAST-UPDATE	2020-06-10T20:14:49Z
External Id	SAMEA6866736
INSDC center name	HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ
INSDC first public	2020-06-06T04:05:46Z
INSDC last update	2020-06-10T20:14:49Z
INSDC status	public
Submitter Id	UMB00059
anaerobic bioreactor	a study of chain elongation with lactate as electron donor
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaSPAdes (v3.11.1)
binning software	metaWRAP modules of metaBAT (2.12.1), MaxBin (2.2.4), CONCOCT (1.0.0) and the metaWRAP-Bin_refinement module
completeness score	99.05
completeness software	CheckM (v1.0.7)
contamination score	0.48
geographic location (latitude)	12.3713° E
geographic location (longitude)	51.3396° N
metagenomic source	bioreactor metagenome
sample derived from	ERS4593485
scientific_name	uncultured Erysipelotrichaceae bacterium
sequencing method	Illumina NextSeq 500
taxonomic identity marker	relative evolutionary divergence (RED) and ANI

Description: This MAG was derived from the experiment of reducing HRT to shape the chain elongation reactor microbiota. By progressively reducing the hydraulic retention time from 8 days to 2 days with different changing modes in both bioreactors operated for 211 days, we achieved higher productivities and yields of the target products n-caproate and n-caprylate. This sample represents a MAG derived from the metagenomic sample ERS4593485

BioProject: PRJEB38353 reducing the hydraulic retention time to shape the chain elongation reactor microbiota
Retrieve all samples from this project