MAG Loc090907-5m_bin-699 from assembly ERS4600500

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Identifiers: BioSample: SAMEA6944628; SRA: ERS4654514

Organism: Candidatus Magasanikiibacteriota bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Patescibacteria group; Parcubacteria group; Candidatus Magasanikiibacteriota; unclassified Candidatus Magasanikbacteria

Attributes

ammonium	0
chloride	263.8
collection date	2009-09-07
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Switzerland
investigation type	metagenome
isolation source	lake water
nitrate	0.00806387882248
nitrite	0
oxygen	0.189999829286555
pH	7.22
project name	microbes in stratified freshwaters
sample name	Loc090907-5m_bin-699
sulfate	139.9
temperature	16.9
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:54Z
ENA-LAST-UPDATE	2020-06-18T09:04:06Z
External Id	SAMEA6944628
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:54Z
INSDC last update	2020-06-18T09:04:06Z
INSDC status	public
Submitter Id	Loc090907-5m_bin-699
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	61.53
completeness software	checkm
conductivity.	0.528
contamination score	1.1
ferric iron	0
ferrous iron	3.6
fluoride	n.a.
geographic location (depth)	5
geographic location (latitude)	47.01861111111111
geographic location (longitude)	6.996666666666667
gtdb_taxonomy	d__Bacteria;p__Patescibacteria;c__ABY1;o__Magasanikbacterales;f__2-02-FULL-50-9b;g__2-02-FULL-50-9b
iron	3.6
metagenomic OTU	anoxic_mOTU_1086
metagenomic source	lake water metagenome
region	Neuchâtel
sample derived from	ERS4600500
sample owner	Stefan Bertilsson
scientific_name	Candidatus Magasanikbacteria bacterium
sequencing method	NovaSeq
site name	Loclat
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6944628
ID:: 15252447

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MAG Loc090907-5m_bin-699 from assembly ERS4600500
MAG Loc090907-5m_bin-699 from assembly ERS4600500

biosample
Rhodosorus marinus voucher CCMP1338 chromosome N4 minicircle mitochondrion, comp...
Rhodosorus marinus voucher CCMP1338 chromosome N4 minicircle mitochondrion, complete sequence
gi|2501516706|gb|OK643896.1|

Nucleotide
Streptococcus downei MFe28 strain NCTC 11391, whole genome shotgun sequencing pr...
Streptococcus downei MFe28 strain NCTC 11391, whole genome shotgun sequencing project
gi|1436710743|emb|UHFA00000000.1|UH 00000

Nucleotide
Homo sapiens DDAH family member 2, ADMA-independent (DDAH2), transcript variant ...
Homo sapiens DDAH family member 2, ADMA-independent (DDAH2), transcript variant 2, mRNA
gi|1676439696|ref|NM_013974.3|

Nucleotide
PREDICTED: solute carrier family 35 member F2-like [Notothenia coriiceps]
PREDICTED: solute carrier family 35 member F2-like [Notothenia coriiceps]
gi|736312086|ref|XP_010796197.1|

Protein

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MAG Loc090907-5m_bin-699 from assembly ERS4600500

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