MAG Loc090907-6m_bin-129 from assembly ERS4600501

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Identifiers: BioSample: SAMEA6945590; SRA: ERS4655474

Organism: Candidatus Magasanikiibacteriota bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Patescibacteria group; Parcubacteria group; Candidatus Magasanikiibacteriota; unclassified Candidatus Magasanikbacteria

Attributes

ammonium	0
chloride	274.5
collection date	2009-09-07
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Switzerland
investigation type	metagenome
isolation source	lake water
nitrate	0.222563055500452
nitrite	0
oxygen	0
pH	7.12
project name	microbes in stratified freshwaters
sample name	Loc090907-6m_bin-129
sulfate	48.1
temperature	12.8
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:54Z
ENA-LAST-UPDATE	2020-06-18T09:05:03Z
External Id	SAMEA6945590
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:54Z
INSDC last update	2020-06-18T09:05:03Z
INSDC status	public
Submitter Id	Loc090907-6m_bin-129
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	52.56
completeness software	checkm
conductivity.	0.542
contamination score	2.74
ferric iron	0
ferrous iron	6.4
fluoride	5.1
geographic location (depth)	6
geographic location (latitude)	47.01861111111111
geographic location (longitude)	6.996666666666667
gtdb_taxonomy	d__Bacteria;p__Patescibacteria;c__ABY1;o__Magasanikbacterales;f__2-02-FULL-50-9b;g__2-02-FULL-50-9b
iron	6.4
metagenomic OTU	anoxic_mOTU_1086
metagenomic source	lake water metagenome
region	Neuchâtel
sample derived from	ERS4600501
sample owner	Stefan Bertilsson
scientific_name	Candidatus Magasanikbacteria bacterium
sequencing method	NovaSeq
site name	Loclat
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6945590
ID:: 15253407

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MAG Loc090907-6m_bin-129 from assembly ERS4600501
MAG Loc090907-6m_bin-129 from assembly ERS4600501

biosample
Homo sapiens fucosyltransferase 3 (Lewis blood group) (FUT3), RefSeqGene on chro...
Homo sapiens fucosyltransferase 3 (Lewis blood group) (FUT3), RefSeqGene on chromosome 19
gi|170763492|ref|NG_007482.1|

Nucleotide
50 kb inversion clade RNA polymerase beta subunit (rpoC1) gene, partial cds; chl...
50 kb inversion clade RNA polymerase beta subunit (rpoC1) gene, partial cds; chloroplast.
PopSet: 391225665

PopSet
LOC127825013 [Homo sapiens]
LOC127825013 [Homo sapiens]
Gene ID:127825013

Gene
LOC129663233 [Homo sapiens]
LOC129663233 [Homo sapiens]
Gene ID:129663233

Gene

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MAG Loc090907-6m_bin-129 from assembly ERS4600501

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