MAG MJ120924B_bin-104 from assembly ERS4600540

Identifiers: BioSample: SAMEA6949649; SRA: ERS4659528

Organism: uncultured Campylobacterales bacterium
cellular organisms; Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; environmental samples

Attributes

ammonium	18.7371805532457
chlorophyll	45.89
collection date	2012-09-24
dissolved organic carbon	2759.20637431623
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Finland
investigation type	metagenome
isolation source	lake water
methane	141.4
oxygen	0.65
pH	5.72
project name	microbes in stratified freshwaters
sample name	MJ120924B_bin-104
temperature	6.45
total phosphorus	1.9707002333136
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:54Z
ENA-LAST-UPDATE	2020-06-18T09:06:01Z
External Id	SAMEA6949649
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:54Z
INSDC last update	2020-06-18T09:06:01Z
INSDC status	public
Submitter Id	MJ120924B_bin-104
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	94.31
completeness software	checkm
contamination score	3.73
geographic location (depth)	2.5
geographic location (latitude)	61.23083333333334
geographic location (longitude)	25.142222222222223
gtdb_taxonomy	d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae
metagenomic OTU	anoxic_mOTU_0388
metagenomic source	lake water metagenome
nitrile+nitrite	118.5
region	Evo
sample derived from	ERS4600540
sample owner	Jatta Saarenheimo
scientific_name	uncultured Campylobacterales bacterium
sequencing method	NovaSeq
site name	Mekkojärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6949649
ID:: 15261267

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MAG MJ120924B_bin-104 from assembly ERS4600540

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