MAG Ki1-1-6m_bin-0473 from assembly ERS4600418

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Identifiers: BioSample: SAMEA6950942; SRA: ERS4660819

Organism: Candidatus Nomurabacteria bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Patescibacteria group; Parcubacteria group; Candidatus Nomurabacteria; unclassified Candidatus Nomurabacteria

Attributes

ammonium	2.49459504407118
collection date	2018-07-24
dissolved carbon dioxide	701.4370268
dissolved organic carbon	1099.02004046392
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	lake water
methane	14.78641218
nitrate	1.0160487316325
nitrite	0
oxygen	0.3
pH	4.99
phosphate	0.252707657252604
project name	microbes in stratified freshwaters
sample name	Ki1-1-6m_bin-0473
sulfate	0.22
temperature	16.1
total dissolved nitrogen	680
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:55Z
ENA-LAST-UPDATE	2020-06-18T09:06:32Z
External Id	SAMEA6950942
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:55Z
INSDC last update	2020-06-18T09:06:32Z
INSDC status	public
Submitter Id	Ki1-1-6m_bin-0473
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	70.25
completeness software	checkm
contamination score	0.16
ferric iron	0
ferrous iron	50.12929473
geographic location (depth)	1.6
geographic location (latitude)	67.92872222222223
geographic location (longitude)	20.361250000000002
gtdb_taxonomy	d__Bacteria;p__Patescibacteria;c__Paceibacteria;o__UBA9983_A;f__UBA9973;g__UBA4124
iron	50.12929473
metagenomic OTU	anoxic_mOTU_1444
metagenomic source	lake water metagenome
region	Kiruna
sample derived from	ERS4600418
sample owner	Gaetan Martin
scientific_name	Candidatus Nomurabacteria bacterium
sequencing method	NovaSeq
site name	Ki1
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6950942
ID:: 15262566

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MAG Ki1-1-6m_bin-0473 from assembly ERS4600418
MAG Ki1-1-6m_bin-0473 from assembly ERS4600418

biosample
Homo sapiens olfactory receptor family 8 subfamily A member 1 (OR8A1), mRNA
Homo sapiens olfactory receptor family 8 subfamily A member 1 (OR8A1), mRNA
gi|1510189939|ref|NM_001005194.2|

Nucleotide
cytochrome oxidase subunit 1, partial (mitochondrion) [Tetrabaeus sp. BOLD:AAU82...
cytochrome oxidase subunit 1, partial (mitochondrion) [Tetrabaeus sp. BOLD:AAU8202]
gi|893650357|gb|AKQ83007.1|

Protein
Homo sapiens exonuclease 3'-5' domain containing 3 (EXD3), transcript variant 3,...
Homo sapiens exonuclease 3'-5' domain containing 3 (EXD3), transcript variant 3, non-coding RNA
gi|1701132067|ref|NR_104598.2|

Nucleotide
Rattus norvegicus mRNA for RPHO-1, complete cds
Rattus norvegicus mRNA for RPHO-1, complete cds
gi|9695267|dbj|AB000489.1|

Nucleotide

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MAG Ki1-1-6m_bin-0473 from assembly ERS4600418

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