MAG Loclat_bin-13074 from assembly ERS4649301

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Anaerolineae bacterium
cellular organisms; Bacteria; Bacillati; Chloroflexota; Anaerolineae; environmental samples

Attributes

collection date	2008-01-15/2009-01-21
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Switzerland
investigation type	metagenome
isolation source	lake water
project name	microbes in stratified freshwaters
sample name	Loclat_bin-13074
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:55Z
ENA-LAST-UPDATE	2020-06-18T09:07:24Z
External Id	SAMEA6951883
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:55Z
INSDC last update	2020-06-18T09:07:24Z
INSDC status	public
Submitter Id	Loclat_bin-13074
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	90.0
completeness software	checkm
contamination score	4.55
geographic location (latitude)	47.01861111111111
geographic location (longitude)	6.996666666666667
gtdb_taxonomy	d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__envOPS12;g__UBA5195
metagenomic OTU	anoxic_mOTU_2841
metagenomic source	lake water metagenome
region	Neuchâtel
sample derived from	ERS4649301
sample owner	Stefan Bertilsson
scientific_name	uncultured Anaerolineae bacterium
sequencing method	NovaSeq
site name	Loclat
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

MAG Loclat_bin-13074 from assembly ERS4649301
MAG Loclat_bin-13074 from assembly ERS4649301

biosample
Rahnella sp. 51-Carrot RpoB (rpoB) gene, partial cds
Rahnella sp. 51-Carrot RpoB (rpoB) gene, partial cds
gi|270161144|gb|GQ149013.1|

Nucleotide
cytochrome b (mitochondrion) [Tanichthys huidongensis]
cytochrome b (mitochondrion) [Tanichthys huidongensis]
gi|2646818622|gb|WRO39448.1|

Protein
NADH dehydrogenase subunit 5 (mitochondrion) [Araiocypris batodes]
NADH dehydrogenase subunit 5 (mitochondrion) [Araiocypris batodes]
gi|2720459351|gb|WRO39433.2|

Protein

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample