MAG YR_bin-5045 from assembly ERS4649312

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Campylobacterales bacterium
cellular organisms; Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; environmental samples

Attributes

collection date	2015-08-13
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Finland
investigation type	metagenome
isolation source	lake water
project name	microbes in stratified freshwaters
sample name	YR_bin-5045
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T17:03:32Z
ENA-LAST-UPDATE	2020-06-18T09:07:48Z
External Id	SAMEA6954726
INSDC center name	BILS
INSDC first public	2020-06-15T17:03:32Z
INSDC last update	2020-06-18T09:07:48Z
INSDC status	public
Submitter Id	YR_bin-5045
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	99.19
completeness software	checkm
contamination score	3.29
geographic location (latitude)	61.21805555555556
geographic location (longitude)	25.2125
gtdb_taxonomy	d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae
metagenomic OTU	anoxic_mOTU_0506
metagenomic source	lake water metagenome
region	Evo
sample derived from	ERS4649312
sample owner	Leyden Fernandez
scientific_name	uncultured Campylobacterales bacterium
sequencing method	NovaSeq
site name	Ylinen Rajajärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

MAG YR_bin-5045 from assembly ERS4649312
MAG YR_bin-5045 from assembly ERS4649312

biosample
MAG MJ-time_bin-5100 from assembly ERS4649303
MAG MJ-time_bin-5100 from assembly ERS4649303

biosample
BJ627745 NIBB Mochii normalized Xenopus early gastrula library Xenopus laevis cD...
BJ627745 NIBB Mochii normalized Xenopus early gastrula library Xenopus laevis cDNA clone XL219d12 5', mRNA sequence
gi|37274638|gnl|dbEST|19932756|dbj| 745.1|

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample