MAG LaPlata_bin-3428 from assembly ERS4649300

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Planctomycetota bacterium
cellular organisms; Bacteria; PVC group; Planctomycetota; environmental samples

Attributes

collection date	2018-07-18
broad-scale environmental context	lentic water body
local-scale environmental context	reservoir
environmental medium	water
geographic location	Puerto Rico
investigation type	metagenome
isolation source	lake water
project name	microbes in stratified freshwaters
sample name	LaPlata_bin-3428
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T17:03:32Z
ENA-LAST-UPDATE	2020-06-18T09:08:13Z
External Id	SAMEA6955641
INSDC center name	BILS
INSDC first public	2020-06-15T17:03:32Z
INSDC last update	2020-06-18T09:08:13Z
INSDC status	public
Submitter Id	LaPlata_bin-3428
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	59.62
completeness software	checkm
contamination score	1.75
geographic location (latitude)	18.333333333333332
geographic location (longitude)	-66.23666666666666
gtdb_taxonomy	d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595
metagenomic OTU	anoxic_mOTU_0929
metagenomic source	lake water metagenome
region	Bayamón
sample derived from	ERS4649300
sample owner	Sari Peura
scientific_name	uncultured planctomycete
sequencing method	NovaSeq
site name	La Plata
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water