MAG Kiruna3_bin-3194 from assembly ERS4649296

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Result Filters

Organism: uncultured Bacteroidetes bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; environmental samples

Attributes

collection date	2018-01-30/2021-01-30
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	lake water
project name	microbes in stratified freshwaters
sample name	Kiruna3_bin-3194
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T17:03:32Z
ENA-LAST-UPDATE	2020-06-18T09:08:35Z
External Id	SAMEA6956508
INSDC center name	BILS
INSDC first public	2020-06-15T17:03:32Z
INSDC last update	2020-06-18T09:08:35Z
INSDC status	public
Submitter Id	Kiruna3_bin-3194
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	99.05
completeness software	checkm
contamination score	0.48
geographic location (latitude)	67.65141666666668
geographic location (longitude)	21.16713888888889
gtdb_taxonomy	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__AKYH767;f__2-12-FULL-35-15;g__2-12-FULL-35-15
metagenomic OTU	anoxic_mOTU_1998
metagenomic source	lake water metagenome
region	Kiruna
sample derived from	ERS4649296
sample owner	Gaetan Martin
scientific_name	uncultured Bacteroidetes bacterium
sequencing method	NovaSeq
site name	Haukijärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

MAG Kiruna3_bin-3194 from assembly ERS4649296
MAG Kiruna3_bin-3194 from assembly ERS4649296

biosample
Xiphosomella falsata cytochrome oxidase subunit 1 (COI) gene, partial cds; mitoc...
Xiphosomella falsata cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial
gi|312154191|gnl|uoguelph|ASHYC4480 OI-5P|gb|HQ548534.1|

Nucleotide
Calyptomena viridis mitochondrion, partial genome
Calyptomena viridis mitochondrion, partial genome
gi|1904996148|gb|MN356274.1|

Nucleotide
Homo sapiens TEA domain transcription factor 3 (TEAD3), transcript variant 1, mR...
Homo sapiens TEA domain transcription factor 3 (TEAD3), transcript variant 1, mRNA
gi|1519245076|ref|NM_003214.4|

Nucleotide
Homo sapiens guanine nucleotide binding protein (G protein), gamma 4, mRNA (cDNA...
Homo sapiens guanine nucleotide binding protein (G protein), gamma 4, mRNA (cDNA clone MGC:26316 IMAGE:4799603), complete cds
gi|18490900|gb|BC022485.1|

Nucleotide

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