MAG MJ-2014_bin-1734 from assembly ERS4649302

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Result Filters

Organism: uncultured Bacteroidetes bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; environmental samples

Attributes

collection date	2014-09-05
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Finland
investigation type	metagenome
isolation source	lake water
project name	microbes in stratified freshwaters
sample name	MJ-2014_bin-1734
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T17:03:32Z
ENA-LAST-UPDATE	2020-06-18T09:08:38Z
External Id	SAMEA6956717
INSDC center name	BILS
INSDC first public	2020-06-15T17:03:32Z
INSDC last update	2020-06-18T09:08:38Z
INSDC status	public
Submitter Id	MJ-2014_bin-1734
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	53.01
completeness software	checkm
contamination score	2.41
geographic location (latitude)	61.23083333333334
geographic location (longitude)	25.142222222222223
gtdb_taxonomy	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__CG2-30-32-10
metagenomic OTU	anoxic_mOTU_0564
metagenomic source	lake water metagenome
region	Evo
sample derived from	ERS4649302
sample owner	Leyden Fernandez
scientific_name	uncultured Bacteroidetes bacterium
sequencing method	NovaSeq
site name	Mekkojärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

MAG MJ-2014_bin-1734 from assembly ERS4649302
MAG MJ-2014_bin-1734 from assembly ERS4649302

biosample
MAG T7_bin-146 from assembly ERS4649305
MAG T7_bin-146 from assembly ERS4649305

biosample
vitronectin [Homo sapiens]
vitronectin [Homo sapiens]
gi|302313193|gb|ADL14521.1|

Protein
dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodie...
dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform 2 [Homo sapiens]
gi|300796849|ref|NP_001177986.1|

Protein
Homo sapiens KH domain containing, RNA binding, signal transduction associated 2...
Homo sapiens KH domain containing, RNA binding, signal transduction associated 2, mRNA (cDNA clone MGC:26664 IMAGE:4796658), complete cds
gi|21706531|gb|BC034043.1|

Nucleotide

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