MAG T7_bin-146 from assembly ERS4649305

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Identifiers: BioSample: SAMEA6956904; SRA: ERS4666773

Organism: uncultured Bacteroidetes bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; environmental samples

Attributes

ammonium	0
collection date	2017-07-17
dissolved organic carbon	91.5850033719933
broad-scale environmental context	lentic water body
local-scale environmental context	pond
environmental medium	water
geographic location	USA
investigation type	metagenome
isolation source	lake water
nitrate	0.580599275218571
nitrite	0
nitrogen	12.9509449049384
oxygen	9.02
pH	4.41
phosphate	0.021058971437717
project name	microbes in stratified freshwaters
sample name	T7_bin-146
temperature	18.94
total phosphorus	9.68561713620709E-05
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T17:03:32Z
ENA-LAST-UPDATE	2020-06-18T09:08:40Z
External Id	SAMEA6956904
INSDC center name	BILS
INSDC first public	2020-06-15T17:03:32Z
INSDC last update	2020-06-18T09:08:40Z
INSDC status	public
Submitter Id	T7_bin-146
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	94.8
completeness software	checkm
conductivity.	0.1121
contamination score	4.14
ferric iron	4.1189
ferrous iron	3.3
geographic location (depth)	0
geographic location (latitude)	68.63333333333334
geographic location (longitude)	-149.6
gtdb_taxonomy	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Taibaiella_B
iron	7.4
metagenomic OTU	anoxic_mOTU_3469
metagenomic source	lake water metagenome
region	Toolik/Alaska
sample derived from	ERS4649305
sample owner	Mariana Kluge
scientific_name	uncultured Bacteroidetes bacterium
sequencing method	NovaSeq
site name	Toolik
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6956904
ID:: 15267874

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MAG T7_bin-146 from assembly ERS4649305
MAG T7_bin-146 from assembly ERS4649305

biosample
vitronectin [Homo sapiens]
vitronectin [Homo sapiens]
gi|302313193|gb|ADL14521.1|

Protein
dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodie...
dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform 2 [Homo sapiens]
gi|300796849|ref|NP_001177986.1|

Protein
Homo sapiens KH domain containing, RNA binding, signal transduction associated 2...
Homo sapiens KH domain containing, RNA binding, signal transduction associated 2, mRNA (cDNA clone MGC:26664 IMAGE:4796658), complete cds
gi|21706531|gb|BC034043.1|

Nucleotide
Homo sapiens chromosome 3 clone RP11-241K3, complete sequence
Homo sapiens chromosome 3 clone RP11-241K3, complete sequence
gi|22507119|gnl|UWGC|bc0319|gb|AC09 2|

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MAG T7_bin-146 from assembly ERS4649305

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