S46T80_bins.24

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Result Filters

Organism: uncultured Holdemania sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania; environmental samples

Attributes

collection date	2016
broad-scale environmental context	Bos indicus gut
local-scale environmental context	Rumen
environmental medium	Rumen Digesta
geographic location	Kenya
investigation type	metagenome-assembled genome
isolation source	Rumen digesta from Bos indicus cattle
project name	Feed-Restricted Rumen
sample name	S46T80_bins.24
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2020-06-26T17:06:09Z
ENA-LAST-UPDATE	2020-06-25T14:32:02Z
External Id	SAMEA7017678
INSDC center name	UNIVERSITY OF EDINBURGH
INSDC first public	2020-06-26T17:06:09Z
INSDC last update	2020-06-25T14:32:02Z
INSDC status	public
Submitter Id	S46T80_bins.24
assembly software	IDBA_UD
binning parameters	coverage and tetramer
binning software	MetaBAT2
completeness score	84.63
completeness software	CheckM
contamination score	1.27
geographic location (latitude)	-1.270313
geographic location (longitude)	36.723973
metagenomic source	gut metagenome
sample derived from	ERS4784438
scientific_name	uncultured Holdemania sp.
sequencing method	pyrosequencing

S46T80_bins.24
S46T80_bins.24

biosample
S49T40_bins.264
S49T40_bins.264

biosample
unknown [Homo sapiens]
unknown [Homo sapiens]
gi|62702315|gb|AAX93239.1|

Protein
PREDICTED: Homo sapiens VPS52 subunit of GARP complex (VPS52), transcript varian...
PREDICTED: Homo sapiens VPS52 subunit of GARP complex (VPS52), transcript variant X4, mRNA
gi|2462494512|ref|XM_054330851.1|

Nucleotide
vacuolar protein sorting-associated protein 52 homolog isoform X2 [Homo sapiens]
vacuolar protein sorting-associated protein 52 homolog isoform X2 [Homo sapiens]
gi|2462495047|ref|XP_054187085.1|

Protein

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