SAG SB-2103-1074-E5 from sample ERS4600376

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Identifiers: BioSample: SAMEA7110381; SRA: ERS4870940

Organism: uncultured Bacteroidetes bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; environmental samples

Attributes

ammonium	28.8809800986751
chloride	1695.094
collection date	2016-03-24
conductivity	0.2132
dissolved carbon dioxide	765.8
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	freshwater
methane	31.6473
nitrate	0.471172439597516
nitrite	0
oxygen	0.115
phosphate	0
project name	microbes in stratified freshwaters
sample name	SB-2103-1074-E5
sulfate	3.08552
temperature	2.7
ENA-CHECKLIST	ERC000024
ENA-FIRST-PUBLIC	2020-07-31T17:03:33Z
ENA-LAST-UPDATE	2020-07-31T15:59:51Z
External Id	SAMEA7110381
INSDC center name	BILS
INSDC first public	2020-07-31T17:03:33Z
INSDC last update	2020-07-31T15:59:51Z
INSDC status	public
Submitter Id	SB-2103-1074-E5
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	39.66
completeness software	checkm
contamination score	1.72
ferric iron	39.6
ferrous iron	0
fluoride	49.16
geographic location (depth)	1.85
geographic location (latitude)	14.458888888888888
geographic location (longitude)	63.34916666666667
gtdb_taxonomy	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium
iron	39.6
metagenomic OTU	anoxic_mOTU_3016
metagenomic source	freshwater metagenome
region	Jämtland
sample derived from	ERS4600376
sample owner	Sari Peura
scientific_name	uncultured Bacteroidetes bacterium
sequencing method	NovaSeq
site name	Lomtjärnan (703480-142137)
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-08-02

Accession:: SAMEA7110381
ID:: 15696408

BioProject SRA Nucleotide

Supplemental Content

Related information

BioProject
BioProject links
SRA
Links to SRA experiments
Nucleotide
Nucleotide links
Assembly
Assembly
Taxonomy
Links to Taxonomy

Recent activity

Clear Turn Off Turn On

SAG SB-2103-1074-E5 from sample ERS4600376
SAG SB-2103-1074-E5 from sample ERS4600376

biosample
roundabout homolog 2 isoform 6 precursor [Mus musculus]
roundabout homolog 2 isoform 6 precursor [Mus musculus]
gi|1284804780|ref|NP_001345423.1|

Protein
Calyptomena viridis voucher LSUMNS B-57082 NADH dehydrogenase subunit 2 (ND2) ge...
Calyptomena viridis voucher LSUMNS B-57082 NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial
gi|1893884354|gb|MN991391.1|

Nucleotide
RecName: Full=Homeobox expressed in ES cells 1; AltName: Full=Homeobox protein A...
RecName: Full=Homeobox expressed in ES cells 1; AltName: Full=Homeobox protein ANF; Short=hAnf
gi|12230168|sp|Q9UBX0.1|HESX1_HUMAN

Protein
ndhI [Actinodaphne henryi]
ndhI [Actinodaphne henryi]
Gene ID:87694447

Gene

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

You are here: NCBI > DNA & RNA > BioSample

Support Center

BioSample

National Center for Biotechnology Information

Result Filters

Send to:

SAG SB-2103-1074-E5 from sample ERS4600376

Supplemental Content

Related information

Recent activity