SAG SB-2103-988-K5 from sample ERS4600374

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Result Filters

Identifiers: BioSample: SAMEA7110405; SRA: ERS4870964

Organism: uncultured prokaryote
unclassified entries; unclassified sequences; environmental samples; prokaryotic environmental samples

Attributes

ammonium	11.3436443261822
chloride	1711.097
collection date	2016-03-24
conductivity	0.19425
dissolved carbon dioxide	671.6
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	freshwater
methane	9.5727
nitrate	1.07575369043414
nitrite	0
oxygen	0.12
phosphate	0.010245189604449
project name	microbes in stratified freshwaters
sample name	SB-2103-988-K5
sulfate	4.187095
temperature	1.9
ENA-CHECKLIST	ERC000024
ENA-FIRST-PUBLIC	2020-07-31T17:03:33Z
ENA-LAST-UPDATE	2020-07-31T15:59:51Z
External Id	SAMEA7110405
INSDC center name	BILS
INSDC first public	2020-07-31T17:03:33Z
INSDC last update	2020-07-31T15:59:51Z
INSDC status	public
Submitter Id	SB-2103-988-K5
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	0.0
completeness software	checkm
contamination score	0.0
ferric iron	20.8
ferrous iron	0
fluoride	46.245
geographic location (depth)	1.05
geographic location (latitude)	14.458888888888888
geographic location (longitude)	63.34916666666667
iron	20.8
metagenomic source	freshwater metagenome
region	Jämtland
sample derived from	ERS4600374
sample owner	Sari Peura
scientific_name	uncultured prokaryote
sequencing method	NovaSeq
site name	Lomtjärnan (703480-142137)
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water