SAG SB-2103-988-P13 from sample ERS4600374

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Result Filters

Identifiers: BioSample: SAMEA7110407; SRA: ERS4870966

Organism: uncultured Candidatus Peregrinibacteria bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Peregrinibacteria; environmental samples

Attributes

ammonium	11.3436443261822
chloride	1711.097
collection date	2016-03-24
conductivity	0.19425
dissolved carbon dioxide	671.6
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	freshwater
methane	9.5727
nitrate	1.07575369043414
nitrite	0
oxygen	0.12
phosphate	0.010245189604449
project name	microbes in stratified freshwaters
sample name	SB-2103-988-P13
sulfate	4.187095
temperature	1.9
ENA-CHECKLIST	ERC000024
ENA-FIRST-PUBLIC	2020-07-31T17:03:33Z
ENA-LAST-UPDATE	2020-07-31T15:59:51Z
External Id	SAMEA7110407
INSDC center name	BILS
INSDC first public	2020-07-31T17:03:33Z
INSDC last update	2020-07-31T15:59:51Z
INSDC status	public
Submitter Id	SB-2103-988-P13
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	36.14
completeness software	checkm
contamination score	0.99
ferric iron	20.8
ferrous iron	0
fluoride	46.245
geographic location (depth)	1.05
geographic location (latitude)	14.458888888888888
geographic location (longitude)	63.34916666666667
gtdb_taxonomy	d__Bacteria;p__Patescibacteria;c__Gracilibacteria;o__UBA1369;f__UBA1369;g__UBA1369
iron	20.8
metagenomic OTU	anoxic_mOTU_1721
metagenomic source	freshwater metagenome
region	Jämtland
sample derived from	ERS4600374
sample owner	Sari Peura
scientific_name	uncultured Candidatus Peregrinibacteria bacterium
sequencing method	NovaSeq
site name	Lomtjärnan (703480-142137)
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water