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SAG SB-2103-992-D21 from sample ERS4600374

Identifiers
BioSample: SAMEA7110409; SRA: ERS4870968
Organism
uncultured Actinomycetes bacterium
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; environmental samples
Attributes
ammonium11.3436443261822
chloride1711.097
collection date2016-03-24
conductivity0.19425
dissolved carbon dioxide671.6
broad-scale environmental contextlentic water body
local-scale environmental contextlake
environmental mediumwater
geographic locationSweden
investigation typemetagenome
isolation sourcefreshwater
methane9.5727
nitrate1.07575369043414
nitrite0
oxygen0.12
phosphate0.010245189604449
project namemicrobes in stratified freshwaters
sample nameSB-2103-992-D21
sulfate4.187095
temperature1.9
ENA-CHECKLISTERC000024
ENA-FIRST-PUBLIC2020-07-31T17:03:33Z
ENA-LAST-UPDATE2020-07-31T15:59:51Z
External IdSAMEA7110409
INSDC center nameBILS
INSDC first public2020-07-31T17:03:33Z
INSDC last update2020-07-31T15:59:51Z
INSDC statuspublic
Submitter IdSB-2103-992-D21
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremegahit
binning parametersmin_len:1500,min_bin_size:10000,maxP:93,minS:50
binning softwaremetabat
collection datametagenome
completeness score61.38
completeness softwarecheckm
contamination score12.18
ferric iron20.8
ferrous iron0
fluoride46.245
geographic location (depth)1.05
geographic location (latitude)14.458888888888888
geographic location (longitude)63.34916666666667
gtdb_taxonomyd__Bacteria;p__Actinobacteriota;c__Actinobacteria;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila
iron20.8
metagenomic OTUanoxic_mOTU_0606
metagenomic sourcefreshwater metagenome
regionJämtland
sample derived fromERS4600374
sample ownerSari Peura
scientific_nameuncultured actinobacterium
sequencing methodNovaSeq
site nameLomtjärnan (703480-142137)
taxonomic identity markergtdbtk followed by sourmash-lca, see publication
water environmental packagewater
BioProject
PRJEB38681
Retrieve all samples from this project

Submission
EBI; 2020-08-02
Accession:
SAMEA7110409
ID:
15696436

BioProject SRA Nucleotide

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