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SAG SB-2103-996-D15 from sample ERS4600339

Identifiers
BioSample: SAMEA7110419; SRA: ERS4870977
Organism
uncultured Actinomycetes bacterium
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; environmental samples
Attributes
ammonium0.207882920339265
collection date2018-08-22
dissolved carbon dioxide194.4967442
dissolved organic carbon990.783218297019
broad-scale environmental contextlentic water body
local-scale environmental contextlake
environmental mediumwater
geographic locationFinland
investigation typemetagenome
isolation sourcefreshwater
methane0.824510505
nitrate0.482219953584313
nitrogen21.7038988484083
organic carbon1024.08685588683
oxygen1.55
phosphate0.01337244686295
project namemicrobes in stratified freshwaters
sample nameSB-2103-996-D15
sulfate0.688
temperature12.5
ENA-CHECKLISTERC000024
ENA-FIRST-PUBLIC2020-07-31T17:03:33Z
ENA-LAST-UPDATE2020-07-31T15:59:51Z
External IdSAMEA7110419
INSDC center nameBILS
INSDC first public2020-07-31T17:03:33Z
INSDC last update2020-07-31T15:59:51Z
INSDC statuspublic
Submitter IdSB-2103-996-D15
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremegahit
binning parametersmin_len:1500,min_bin_size:10000,maxP:93,minS:50
binning softwaremetabat
collection datametagenome
completeness score37.12
completeness softwarecheckm
contamination score0.0
geographic location (depth)2.3
geographic location (latitude)25.11388888888889
geographic location (longitude)61.20805555555556
gtdb_taxonomyd__Bacteria;p__Actinobacteriota;c__Actinobacteria;o__Nanopelagicales;f__Nanopelagicaceae;g__PALSA-747
metagenomic OTUanoxic_mOTU_0039
metagenomic sourcefreshwater metagenome
regionEvo
sample derived fromERS4600339
sample ownerSari Peura
scientific_nameuncultured actinobacterium
sequencing methodNovaSeq
site nameAlinen Mustajärvi
taxonomic identity markergtdbtk followed by sourmash-lca, see publication
water environmental packagewater
BioProject
PRJEB38681
Retrieve all samples from this project

Submission
EBI; 2020-08-02
Accession:
SAMEA7110419
ID:
15696445

BioProject SRA Nucleotide

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