Chicken_23_mag_88

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Result Filters

Organism: uncultured Clostridium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; environmental samples

Attributes

collection date	not collected
broad-scale environmental context	Gallus gallus domesticus
local-scale environmental context	Caeca
environmental medium	Gut contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB33338
sample name	Chicken_23_mag_88
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-09-08T17:06:11Z
ENA-LAST-UPDATE	2020-08-21T15:32:06Z
External Id	SAMEA7202388
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2020-09-08T17:06:11Z
INSDC last update	2020-08-21T15:32:06Z
INSDC status	public
Submitter Id	Chicken_23_mag_88
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Metabat2
binning parameters	-v -m 2000
binning software	Metabat2
common name	uncultured Clostridium sp.
completeness score	98.1
completeness software	CheckM
contamination score	0
geographic location (latitude)	55.86513
geographic location (longitude)	-3.197356
metagenomic source	Gallus gallus
sample derived from	ERS3558298
scientific_name	uncultured Clostridium sp.
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	CheckM_markers

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS3558298

BioProject: PRJEB33338 Metagenomics of chicken cecal contents
Retrieve all samples from this project

Chicken_23_mag_88
Chicken_23_mag_88

biosample
Metagenome or environmental sample from air metagenome
Metagenome or environmental sample from air metagenome

biosample
cytochrome oxidase subunit I, partial (mitochondrion) [Amphibalanus sp. AFG-2015...
cytochrome oxidase subunit I, partial (mitochondrion) [Amphibalanus sp. AFG-2015]
gi|857027001|gb|AKO22803.1|

Protein
Rhodococcus erythropolis strain:JUb83
Rhodococcus erythropolis strain:JUb83
Rhodococcus erythropolis JUb83 genome sequencing

BioProject
Chain b, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3
Chain b, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3
gi|2843534007|pdb|8XO0|b

Protein

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