Chicken_7_mag_192

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Result Filters

Organism: uncultured Clostridium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; environmental samples

Attributes

collection date	not collected
broad-scale environmental context	Gallus gallus domesticus
local-scale environmental context	Caeca
environmental medium	Gut contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB33338
sample name	Chicken_7_mag_192
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-09-08T17:06:11Z
ENA-LAST-UPDATE	2020-08-21T15:49:34Z
External Id	SAMEA7202452
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2020-09-08T17:06:11Z
INSDC last update	2020-08-21T15:49:34Z
INSDC status	public
Submitter Id	Chicken_7_mag_192
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Metabat2
binning parameters	-v -m 2000
binning software	Metabat2
common name	uncultured Clostridium sp.
completeness score	80.65
completeness software	CheckM
contamination score	0
geographic location (latitude)	55.86513
geographic location (longitude)	-3.197356
metagenomic source	Gallus gallus
sample derived from	ERS3558282
scientific_name	uncultured Clostridium sp.
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	CheckM_markers

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS3558282

BioProject: PRJEB33338 Metagenomics of chicken cecal contents
Retrieve all samples from this project

Chicken_7_mag_192
Chicken_7_mag_192

biosample
Metagenome or environmental sample from air metagenome
Metagenome or environmental sample from air metagenome

biosample
lysophosphatidic acid receptor 6 [Homo sapiens]
lysophosphatidic acid receptor 6 [Homo sapiens]
gi|241982706|ref|NP_001155969.1|

Protein
Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched...
Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:C920009D07 product:TANDEM PH DOMAIN CONTAINING PROTEIN-1 homolog [Homo sapiens], full insert sequence
gi|26350468|dbj|AK083340.1|

Nucleotide
Chain A, Kelch-like ECH-associated protein 1
Chain A, Kelch-like ECH-associated protein 1
gi|2843535033|pdb|9F2P|A

Protein

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