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TEDDY OU Gut MAG

Identifiers
BioSample: SAMEA7429002; SRA: ERS5187217
Organism
Actinobaculum massiliense
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinobaculum
Attributes
collection datenot provided
broad-scale environmental contexthuman gut
local-scale environmental contexthuman gut
environmental mediumfecal
geographic locationrestricted access
host sexmale
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project namePRJEB40730
sample nameTEDDY_OU_SUBJ1214227990_MAG66
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2021-01-30T04:09:56Z
ENA-LAST-UPDATE2020-10-15T05:51:35Z
External IdSAMEA7429002
INSDC center namePan Lab at OU
INSDC first public2021-01-30T04:09:56Z
INSDC last update2020-10-15T05:51:35Z
INSDC statuspublic
MAG coverage softwarebowtie2; v2.3.5.1
Submitter IdTEDDY_OU_SUBJ1214227990_MAG66
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters--minContig 2000
binning softwareMetaBAT;2.12.1
completeness score98.26
completeness softwareCheckM;v1.0.13
contamination score0.87
geographic location (latitude)restricted access
geographic location (longitude)restricted access
metagenomic sourcehuman gut metagenome
sample derived fromSAMN09409003,SAMN09410777,SAMN09411787,SAMN09413819,SAMN09414145,SAMN09414400,SAMN09414409,SAMN09415351,SAMN09415363,SAMN09415573,SAMN09415648,SAMN09416553,SAMN09416716,SAMN09417766,SAMN09418170,SAMN09418492,SAMN09420006,SAMN09420216
scientific_nameActinobaculum massiliense
sequencing methodIllumina HiSeq 2000
taxonomic classificationGTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1214227990: SRR7557820,SRR7561124,SRR7565302,SRR7567736,SRR7561310,SRR7561338,SRR7557866,SRR7567060,SRR7557364,SRR7567312,SRR7557269,SRR7557472,SRR7561323,SRR7562392,SRR7563490,SRR7563017,SRR7566898,SRR7563994

Submission
EBI; 2021-02-02
Accession:
SAMEA7429002
ID:
17739709

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