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TEDDY OU Gut MAG

Identifiers
BioSample: SAMEA7430274; SRA: ERS5188487
Organism
Erysipelotrichaceae bacterium 3_1_53
cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; unclassified Erysipelotrichaceae
Attributes
collection datenot provided
broad-scale environmental contexthuman gut
local-scale environmental contexthuman gut
environmental mediumfecal
geographic locationrestricted access
host sexmale
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project namePRJEB40730
sample nameTEDDY_OU_SUBJ1261646992_MAG19
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2021-01-30T04:09:57Z
ENA-LAST-UPDATE2020-10-15T06:12:55Z
External IdSAMEA7430274
INSDC center namePan Lab at OU
INSDC first public2021-01-30T04:09:57Z
INSDC last update2020-10-15T06:12:55Z
INSDC statuspublic
MAG coverage softwarebowtie2; v2.3.5.1
Submitter IdTEDDY_OU_SUBJ1261646992_MAG19
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters--minContig 2000
binning softwareMetaBAT;2.12.1
completeness score97.17
completeness softwareCheckM;v1.0.13
contamination score0.00
geographic location (latitude)restricted access
geographic location (longitude)restricted access
metagenomic sourcehuman gut metagenome
sample derived fromSAMN09408308,SAMN09408821,SAMN09409305,SAMN09413501,SAMN09413626,SAMN09413644,SAMN09414142,SAMN09414331,SAMN09417813,SAMN09418906,SAMN09420375
scientific_nameErysipelotrichaceae bacterium 3_1_53
sequencing methodIllumina HiSeq 2000
taxonomic classificationGTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1261646992: SRR7567208,SRR7558758,SRR7562147,SRR7569629,SRR7558520,SRR7566741,SRR7559003,SRR7561969,SRR7563967,SRR7558134,SRR7562407

Submission
EBI; 2021-02-02
Accession:
SAMEA7430274
ID:
17740980

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