TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7432054; SRA: ERS5190274

Organism: Gleimia europaea
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Gleimia

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	male
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1320820418_MAG52
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:07Z
ENA-LAST-UPDATE	2020-10-15T06:36:03Z
External Id	SAMEA7432054
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:07Z
INSDC last update	2020-10-15T06:36:03Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1320820418_MAG52
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	98.34
completeness software	CheckM;v1.0.13
contamination score	0.95
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408369,SAMN09408995,SAMN09409754,SAMN09409883,SAMN09409883,SAMN09409933,SAMN09410562,SAMN09411005,SAMN09411344,SAMN09411522,SAMN09411699,SAMN09411699,SAMN09411715,SAMN09411826,SAMN09412100,SAMN09412163,SAMN09412202,SAMN09412212,SAMN09412212,SAMN09412499,SAMN09412510,SAMN09412915,SAMN09412915,SAMN09413531,SAMN09413531,SAMN09414102,SAMN09414414,SAMN09414434,SAMN09414931,SAMN09415165,SAMN09415517,SAMN09415779,SAMN09416822,SAMN09417075,SAMN09417075,SAMN09417075,SAMN09417647,SAMN09417647,SAMN09417647,SAMN09417799,SAMN09418577,SAMN09418762,SAMN09418762,SAMN09419116,SAMN09419348,SAMN09419350,SAMN09419895,SAMN09419895,SAMN09419940,SAMN09419940,SAMN09419953,SAMN09420227,SAMN09420989,SAMN09420989,SAMN09421029,SAMN09421029,SAMN09421085,SAMN09421085,SAMN09421200
scientific_name	Gleimia europaea
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1320820418: SRR7561815,SRR7558999,SRR7564027,SRR7566236,SRR7566237,SRR7562749,SRR7566576,SRR7561189,SRR7563720,SRR7559898,SRR7557351,SRR7557350,SRR7568805,SRR7557004,SRR7567745,SRR7565839,SRR7559561,SRR7561707,SRR7561706,SRR7566077,SRR7562385,SRR7568752,SRR7568753,SRR7567972,SRR7567973,SRR7559694,SRR7566059,SRR7561272,SRR7561485,SRR7561016,SRR7562576,SRR7558816,SRR7566663,SRR7557554,SRR7557555,SRR7557553,SRR7568692,SRR7568693,SRR7568694,SRR7564393,SRR7562946,SRR7560892,SRR7560893,SRR7569391,SRR7562255,SRR7568326,SRR7568264,SRR7568265,SRR7564934,SRR7564933,SRR7559097,SRR7564757,SRR7559397,SRR7559398,SRR7564071,SRR7564072,SRR7561020,SRR7561021,SRR7558116

Submission: EBI; 2021-02-02

Accession:: SAMEA7432054
ID:: 17742403

BioSample

National Center for Biotechnology Information

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