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TEDDY OU Gut MAG

Identifiers
BioSample: SAMEA7433351; SRA: ERS5191569
Organism
Holdemania sp. Marseille-P2844
cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania; unclassified Holdemania
Attributes
collection datenot provided
broad-scale environmental contexthuman gut
local-scale environmental contexthuman gut
environmental mediumfecal
geographic locationrestricted access
host sexmale
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project namePRJEB40730
sample nameTEDDY_OU_SUBJ1369453575_MAG106
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2021-01-30T04:10:02Z
ENA-LAST-UPDATE2020-10-15T06:56:40Z
External IdSAMEA7433351
INSDC center namePan Lab at OU
INSDC first public2021-01-30T04:10:02Z
INSDC last update2020-10-15T06:56:40Z
INSDC statuspublic
MAG coverage softwarebowtie2; v2.3.5.1
Submitter IdTEDDY_OU_SUBJ1369453575_MAG106
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters--minContig 2000
binning softwareMetaBAT;2.12.1
completeness score96.19
completeness softwareCheckM;v1.0.13
contamination score3.17
geographic location (latitude)restricted access
geographic location (longitude)restricted access
metagenomic sourcehuman gut metagenome
sample derived fromSAMN09410417,SAMN09410908,SAMN09411251,SAMN09411582,SAMN09411846,SAMN09412012,SAMN09412052,SAMN09412064,SAMN09412671,SAMN09413545,SAMN09413924,SAMN09414658,SAMN09416146,SAMN09416304,SAMN09416338,SAMN09416340,SAMN09416980,SAMN09417261,SAMN09418233,SAMN09418752,SAMN09418771,SAMN09419292,SAMN09419640,SAMN09419741,SAMN09419786,SAMN09420871,SAMN09421122
scientific_nameHoldemania sp. Marseille-P2844
sequencing methodIllumina HiSeq 2000
taxonomic classificationGTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1369453575: SRR7558256,SRR7556840,SRR7560712,SRR7557162,SRR7559986,SRR7567343,SRR7556830,SRR7563510,SRR7559120,SRR7566339,SRR7564401,SRR7557049,SRR7564436,SRR7564476,SRR7567203,SRR7567129,SRR7566858,SRR7569469,SRR7566338,SRR7557801,SRR7566415,SRR7569132,SRR7560118,SRR7558042,SRR7558455,SRR7562876,SRR7560360

Submission
EBI; 2021-02-02
Accession:
SAMEA7433351
ID:
17743698

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