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TEDDY OU Gut MAG

Identifiers
BioSample: SAMEA7436438; SRA: ERS5194652
Organism
Holdemania sp. Marseille-P2844
cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania; unclassified Holdemania
Attributes
collection datenot provided
broad-scale environmental contexthuman gut
local-scale environmental contexthuman gut
environmental mediumfecal
geographic locationrestricted access
host sexmale
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project namePRJEB40730
sample nameTEDDY_OU_SUBJ1467849044_MAG42
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2021-01-30T04:10:03Z
ENA-LAST-UPDATE2020-10-15T07:45:35Z
External IdSAMEA7436438
INSDC center namePan Lab at OU
INSDC first public2021-01-30T04:10:03Z
INSDC last update2020-10-15T07:45:35Z
INSDC statuspublic
MAG coverage softwarebowtie2; v2.3.5.1
Submitter IdTEDDY_OU_SUBJ1467849044_MAG42
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters--minContig 2000
binning softwareMetaBAT;2.12.1
completeness score96.51
completeness softwareCheckM;v1.0.13
contamination score2.38
geographic location (latitude)restricted access
geographic location (longitude)restricted access
metagenomic sourcehuman gut metagenome
sample derived fromSAMN09408225,SAMN09408746,SAMN09408845,SAMN09410234,SAMN09410951,SAMN09411669,SAMN09412235,SAMN09412411,SAMN09412862,SAMN09413680,SAMN09413681,SAMN09413932,SAMN09414023,SAMN09414177,SAMN09414295,SAMN09415408,SAMN09415904,SAMN09416456,SAMN09417876,SAMN09417884,SAMN09418239,SAMN09419762,SAMN09419770,SAMN09420166
scientific_nameHoldemania sp. Marseille-P2844
sequencing methodIllumina HiSeq 2000
taxonomic classificationGTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1467849044: SRR7563387,SRR7567687,SRR7569671,SRR7558258,SRR7561365,SRR7560835,SRR7557853,SRR7569301,SRR7566429,SRR7564776,SRR7567693,SRR7559825,SRR7562625,SRR7561468,SRR7567393,SRR7562178,SRR7563543,SRR7563638,SRR7568766,SRR7558736,SRR7557647,SRR7567787,SRR7567439,SRR7560257

Submission
EBI; 2021-02-02
Accession:
SAMEA7436438
ID:
17746781

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