TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7438692; SRA: ERS5196903

Organism: Holdemania sp. Marseille-P2844
cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania; unclassified Holdemania

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	male
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1552707857_MAG56
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:01Z
ENA-LAST-UPDATE	2020-10-15T08:21:12Z
External Id	SAMEA7438692
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:01Z
INSDC last update	2020-10-15T08:21:12Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1552707857_MAG56
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	98.10
completeness software	CheckM;v1.0.13
contamination score	2.32
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408974,SAMN09408974,SAMN09408998,SAMN09408998,SAMN09409147,SAMN09409467,SAMN09409606,SAMN09409606,SAMN09410116,SAMN09410116,SAMN09410700,SAMN09410732,SAMN09410797,SAMN09411622,SAMN09412019,SAMN09412019,SAMN09412903,SAMN09412950,SAMN09413254,SAMN09413393,SAMN09413451,SAMN09413683,SAMN09413719,SAMN09413999,SAMN09413999,SAMN09414244,SAMN09414467,SAMN09415013,SAMN09415013,SAMN09415018,SAMN09415312,SAMN09415825,SAMN09415830,SAMN09416385,SAMN09417246,SAMN09417641,SAMN09417890,SAMN09418329,SAMN09418725,SAMN09418882,SAMN09419020,SAMN09419020,SAMN09419352,SAMN09419726,SAMN09419771,SAMN09419867,SAMN09420173,SAMN09420585,SAMN09420585,SAMN09421188
scientific_name	Holdemania sp. Marseille-P2844
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1552707857: SRR7558573,SRR7558574,SRR7564417,SRR7564418,SRR7564708,SRR7563969,SRR7569826,SRR7569825,SRR7561263,SRR7561264,SRR7562186,SRR7567997,SRR7560834,SRR7560325,SRR7569583,SRR7569584,SRR7568305,SRR7560124,SRR7559936,SRR7567349,SRR7568728,SRR7560911,SRR7564756,SRR7569406,SRR7569405,SRR7565986,SRR7566988,SRR7565492,SRR7565491,SRR7567293,SRR7566561,SRR7565970,SRR7564481,SRR7559521,SRR7568030,SRR7561261,SRR7566075,SRR7561047,SRR7569655,SRR7569138,SRR7570006,SRR7570007,SRR7568419,SRR7568941,SRR7564342,SRR7562096,SRR7557324,SRR7559759,SRR7559760,SRR7567818

Submission: EBI; 2021-02-02

Accession:: SAMEA7438692
ID:: 17749035

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National Center for Biotechnology Information

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TEDDY OU Gut MAG

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