TEDDY OU Gut MAG

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Result Filters

Organism: Gleimia europaea
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Gleimia

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	female
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1655412096_MAG42
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:01Z
ENA-LAST-UPDATE	2020-10-15T08:59:35Z
External Id	SAMEA7441166
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:01Z
INSDC last update	2020-10-15T08:59:35Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1655412096_MAG42
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	97.88
completeness software	CheckM;v1.0.13
contamination score	0.47
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408020,SAMN09408157,SAMN09409568,SAMN09410135,SAMN09414480,SAMN09415622,SAMN09418976,SAMN09419405,SAMN09420162,SAMN09420664
scientific_name	Gleimia europaea
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1655412096: SRR7564762,SRR7557481,SRR7563147,SRR7568862,SRR7561257,SRR7561551,SRR7568057,SRR7557246,SRR7559006,SRR7566875