TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7443428; SRA: ERS5201630

Organism: Merdimonas faecis
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Merdimonas

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	female
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1737921633_MAG19
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:06Z
ENA-LAST-UPDATE	2020-10-15T09:35:21Z
External Id	SAMEA7443428
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:06Z
INSDC last update	2020-10-15T09:35:21Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1737921633_MAG19
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	97.16
completeness software	CheckM;v1.0.13
contamination score	1.29
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408123,SAMN09408868,SAMN09408868,SAMN09408940,SAMN09409118,SAMN09409434,SAMN09409685,SAMN09409807,SAMN09410401,SAMN09410503,SAMN09410718,SAMN09410859,SAMN09410859,SAMN09411008,SAMN09411085,SAMN09411241,SAMN09413785,SAMN09413785,SAMN09414964,SAMN09415543,SAMN09417957,SAMN09417981,SAMN09419595,SAMN09421089,SAMN09421089
scientific_name	Merdimonas faecis
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1737921633: SRR7569316,SRR7567238,SRR7567237,SRR7559012,SRR7560563,SRR7560681,SRR7560301,SRR7558856,SRR7563816,SRR7564457,SRR7567513,SRR7562470,SRR7562469,SRR7559393,SRR7567374,SRR7567825,SRR7569193,SRR7569194,SRR7566443,SRR7564772,SRR7564367,SRR7568033,SRR7563437,SRR7568686,SRR7568685

Submission: EBI; 2021-02-02

Accession:: SAMEA7443428
ID:: 17754275

BioSample

National Center for Biotechnology Information

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